Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_D07
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25 |Schiz...    58   1e-09
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    57   2e-09
SPBC16E9.09c |||COPII vesicle coat component Erp5/Erp6|Schizosac...    54   1e-08
SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4 |Schizosa...    36   0.005
SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyc...    27   2.5  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.5  
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|...    26   4.3  

>SPAC23H4.03c |erv25||COPII-coated vesicle component Erv25
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 57.6 bits (133), Expect = 1e-09
 Identities = 27/54 (50%), Positives = 38/54 (70%)
 Frame = +2

Query: 155 IYYLQQREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 316
           IYYLQ RE RFR T+ESTN+RV  ++ L    L ++  WQ+ +L+SFF+ K L+
Sbjct: 162 IYYLQAREARFRNTNESTNERVKNFAYLTFISLFVLVIWQILYLRSFFQRKHLI 215


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 26/52 (50%), Positives = 35/52 (67%)
 Frame = +2

Query: 161 YLQQREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 316
           Y   RE   R T+ESTN RV WWS+LQT +LV +  +Q+ +LK  FE K++V
Sbjct: 148 YFVARERIHRNTAESTNDRVKWWSILQTVILVSVCVFQIFYLKRLFEVKRVV 199


>SPBC16E9.09c |||COPII vesicle coat component
           Erp5/Erp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 215

 Score = 54.4 bits (125), Expect = 1e-08
 Identities = 24/50 (48%), Positives = 34/50 (68%)
 Frame = +2

Query: 167 QQREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 316
           + RE  FR TSES N RV+ W+++Q  VL++   WQ+ HL+ FF  +KLV
Sbjct: 166 RSREMTFRDTSESANSRVVRWTIVQIVVLLVTCIWQLSHLQRFFVKEKLV 215


>SPAC17A5.08 |||COPII-coated vesicle component Erp2/3/4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 35.5 bits (78), Expect = 0.005
 Identities = 16/47 (34%), Positives = 29/47 (61%)
 Frame = +2

Query: 161 YLQQREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFE 301
           Y + RE R   T +ST  R+ W+SL ++ ++V +   Q+  +K+FF+
Sbjct: 157 YFKTREHRNYSTVKSTQARIFWFSLAESIMVVALSALQVFIVKTFFK 203


>SPAC2F3.08 |sut1||alpha-glucoside transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 112 FCCKTTISVTI-VNVNLLFTAKRRAFPTNIRKHKPAGALVEFAT 240
           FC   +IS+ + V +  +F ++RR FP    +   AG + EF T
Sbjct: 218 FCVLASISLVLTVTITTIFVSERR-FPPVEHEKSVAGEIFEFFT 260


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -3

Query: 171 CCK**IYINNSYRNSCFTAEFXRN 100
           CC+    +N SYR SCF     RN
Sbjct: 160 CCQNCDILNYSYRESCFKCRVPRN 183


>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +1

Query: 199 RKHKPAGALVEFATDRCPCHHRLLADETSQEL 294
           RKH+    +V    DR  C H  L  E +++L
Sbjct: 716 RKHQADACIVRVMKDRKVCEHNQLMAEVTRQL 747


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,723,573
Number of Sequences: 5004
Number of extensions: 30075
Number of successful extensions: 66
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)