Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_D07
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical ...    82   3e-16
Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical pr...    53   2e-07
AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical ...    44   1e-04
AF014940-5|AAB63937.1|  203|Caenorhabditis elegans Suppressor/en...    43   1e-04

>AL117207-7|CAB60397.1|  211|Caenorhabditis elegans Hypothetical
           protein Y60A3A.9 protein.
          Length = 211

 Score = 81.8 bits (193), Expect = 3e-16
 Identities = 37/52 (71%), Positives = 41/52 (78%)
 Frame = +2

Query: 161 YLQQREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 316
           Y + REERFRQTSESTN RV +WS+ Q  VL I G WQMRHL+ FFEAKKLV
Sbjct: 160 YQRYREERFRQTSESTNSRVFYWSIAQVVVLAITGAWQMRHLRGFFEAKKLV 211


>Z74035-1|CAA98480.1|  204|Caenorhabditis elegans Hypothetical
           protein F47G9.1 protein.
          Length = 204

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 22/52 (42%), Positives = 37/52 (71%)
 Frame = +2

Query: 161 YLQQREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 316
           +++QREE  R T+ESTN RVL+ S+     L+ +  WQ+  L+++F++KKL+
Sbjct: 152 FMRQREEEMRNTNESTNSRVLYLSIFSMLCLLGLAIWQVLFLRNYFKSKKLI 203


>AF039713-7|AAB96722.1|  203|Caenorhabditis elegans Hypothetical
           protein F57B10.5 protein.
          Length = 203

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 22/46 (47%), Positives = 30/46 (65%)
 Frame = +2

Query: 173 REERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKK 310
           RE   R+ +E  N+RV+ WSL Q+ V+V IG  Q+  LKSFF  K+
Sbjct: 155 REATGRKRAEELNERVMIWSLGQSAVVVFIGIGQVFLLKSFFNDKR 200


>AF014940-5|AAB63937.1|  203|Caenorhabditis elegans
           Suppressor/enhancer of lin-12 protein9 protein.
          Length = 203

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 20/52 (38%), Positives = 32/52 (61%)
 Frame = +2

Query: 161 YLQQREERFRQTSESTNQRVLWWSLLQTGVLVIIGYWQMRHLKSFFEAKKLV 316
           Y++ RE   R  +E+TN RV+ W+  +  VLV +   Q+ +LK FFE + +V
Sbjct: 152 YMEVRERVHRNINENTNSRVVMWAAFEAFVLVGMTVGQIFYLKRFFEVRTMV 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,463,631
Number of Sequences: 27780
Number of extensions: 169045
Number of successful extensions: 357
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)