Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_D02
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 267 1e-72
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 37 0.003
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 33 0.047
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 33 0.062
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 32 0.081
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 29 0.76
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 29 1.0
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 29 1.0
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 27 2.3
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi... 27 2.3
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 27 2.3
SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a... 27 3.1
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S... 27 3.1
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 27 4.0
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac... 27 4.0
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 26 7.1
SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3 |Schizosac... 26 7.1
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 25 9.4
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 25 9.4
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 9.4
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 25 9.4
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 267 bits (654), Expect = 1e-72
Identities = 122/207 (58%), Positives = 157/207 (75%)
Frame = +3
Query: 168 RKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCP 347
+K +PN L+V++A +DDNSV+ LS ME LQLFRGDTV++KGKRRK+TV IVL+D+
Sbjct: 39 KKRKPNSLVVDDATNDDNSVITLSSNTMETLQLFRGDTVVVKGKRRKDTVLIVLTDEEME 98
Query: 348 DEKIRMXXXXXXXXXXXXSDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPY 527
D R+ D+V+I PCP +KY +R+ +LP+ D+VEGLTG+LF+VYLKPY
Sbjct: 99 DGVARINRVVRNNLRVRLGDIVTINPCPDIKYAERISVLPLADTVEGLTGSLFDVYLKPY 158
Query: 528 FXEAYRPIHRDDTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEAL 707
F EAYRPI + D F+VRG MR VEFKVV+ P F IV+ DT+IH +GEPI RE+EE +L
Sbjct: 159 FVEAYRPIRKGDLFVVRGSMRQVEFKVVDVAPDEFGIVSQDTIIHWEGEPINREDEESSL 218
Query: 708 NAVGYDDIGGCRKQLAQIKEMVELPLR 788
VGYDDIGGCR+Q+AQI+E+VELPLR
Sbjct: 219 AEVGYDDIGGCRRQMAQIRELVELPLR 245
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 37.1 bits (82), Expect = 0.003
Identities = 13/24 (54%), Positives = 21/24 (87%)
Frame = +3
Query: 714 VGYDDIGGCRKQLAQIKEMVELPL 785
V Y D+GGC++Q+ +++E+VELPL
Sbjct: 176 VTYGDVGGCKEQIERLREVVELPL 199
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 33.1 bits (72), Expect = 0.047
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 666 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPL 785
D +P+ + + Y DIGG Q+ +IKE VELPL
Sbjct: 172 DTDPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPL 211
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 32.7 bits (71), Expect = 0.062
Identities = 13/27 (48%), Positives = 21/27 (77%)
Frame = +3
Query: 708 NAVGYDDIGGCRKQLAQIKEMVELPLR 788
+AV + IGG + Q+AQI+++VELP +
Sbjct: 274 SAVTFSSIGGLQAQIAQIRDIVELPFQ 300
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 32.3 bits (70), Expect = 0.081
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 720 YDDIGGCRKQLAQIKEMVELPLR 788
Y+ +GG KQ+ +IKE++ELP++
Sbjct: 144 YEMVGGLEKQIKEIKEVIELPVK 166
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 29.1 bits (62), Expect = 0.76
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 714 VGYDDIGGCRKQLAQIKEMVELPL 785
V Y D+GG Q +++E VELPL
Sbjct: 131 VSYADVGGLDVQKQEVREAVELPL 154
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 1.0
Identities = 8/25 (32%), Positives = 19/25 (76%)
Frame = +3
Query: 714 VGYDDIGGCRKQLAQIKEMVELPLR 788
+ + +GG +Q+ +++E++ELPL+
Sbjct: 129 ISFAGVGGLNEQIRELREVIELPLK 153
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 28.7 bits (61), Expect = 1.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 660 HCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPL 785
H D + I+ + + ++ IGG + Q+KEMV LPL
Sbjct: 351 HIDEKTIRSTDPFANRENLDFNSIGGLEDIILQLKEMVMLPL 392
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +3
Query: 708 NAVGYDDIGGCRKQLAQIKEMVELPL 785
+++ ++ +GG + Q+KEMV LPL
Sbjct: 261 SSLSFESVGGLDNYINQLKEMVMLPL 286
>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/26 (38%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 178 DPTVSLSKKQSAMTTQSWH-FHRPKW 252
DP ++ + Q + T+SWH FH +W
Sbjct: 272 DPVMARALSQGPIVTKSWHYFHYSEW 297
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 720 YDDIGGCRKQLAQIKEMVELPLR 788
Y DIGG KQ+ ++ E + LP++
Sbjct: 184 YSDIGGLSKQIEELFEAIVLPMQ 206
>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -1
Query: 483 QLNHQLAVCGLV---FHISLKDTELWI 412
QLN ++ CG++ F++ LKD E W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
S15a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Frame = -1
Query: 483 QLNHQLAVCGLV---FHISLKDTELWI 412
QLN ++ CG++ F++ LKD E W+
Sbjct: 64 QLNGRINKCGVISPRFNVKLKDIEKWV 90
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 639 VAPDTVIHCDGEPIKREEEEEALNAVGYDD 728
V PD + D E I+REEE++A A ++
Sbjct: 200 VMPDLYFYRDPEEIEREEEQKAAAAAAAEE 229
>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
E3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 26.6 bits (56), Expect = 4.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 453 LVFHISLKDTELWIP-HQKDAHEGCFSRHGSSEFSHQG 343
LV + LKD WI + + E F G ++FS+QG
Sbjct: 435 LVSDLYLKDLWSWIHLSHRQSEESLFGDTGDTDFSYQG 472
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 25.8 bits (54), Expect = 7.1
Identities = 17/66 (25%), Positives = 33/66 (50%)
Frame = +3
Query: 165 DRKDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNC 344
D DRP RLIVE A+ + + + + + E+ + FR LK + ++ + S+ +
Sbjct: 591 DYNDRPRRLIVEFAIEN----IQVVKRRQEKEKSFRQKAKQLKQQEDEDNLKRKRSESDV 646
Query: 345 PDEKIR 362
D + +
Sbjct: 647 EDNEAK 652
>SPCC645.04 |nse3||Smc5-6 complex non-SMC subunit Nse3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 183 WVCPCDRRIAVDKSSGLLLSAILFTIYC*NLRTIIIFITPNNYS 52
WV + + K S L++ ++L T Y L T+I FI ++ S
Sbjct: 183 WVLRSTLPMELQKDSRLIVDSVLDTAYYGFLMTVIAFIAVSHCS 226
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 148 IDRDPPIARTDPTVSLSKKQSAMTTQS 228
I DPP+ R PTV L + S+ + S
Sbjct: 76 IPSDPPLPRAVPTVRLGRSTSSRSRNS 102
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +3
Query: 198 EEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKE 311
E+AV D+N+ ++L+ + + RGD ++ G ++
Sbjct: 247 EKAVCDENTKISLTNTEHYKFHSLRGDVEVVVGDLERD 284
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/25 (36%), Positives = 17/25 (68%)
Frame = +3
Query: 714 VGYDDIGGCRKQLAQIKEMVELPLR 788
V +DDIGG + +++ ++LPL+
Sbjct: 652 VNWDDIGGLEEAKTVLRDTLQLPLQ 676
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Frame = +3
Query: 192 IVEEAVSDDNSVVALSQA-KMEQLQLFR---GDTVLLKGKRRKETVC 320
+ +E SD++ ++A++ EQ+ R D LL GK++KE +C
Sbjct: 509 LFKELGSDNSELIAVTNVLPEEQVNFLRWSFDDKDLLIGKQKKEIIC 555
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,157,228
Number of Sequences: 5004
Number of extensions: 64557
Number of successful extensions: 198
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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