Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_D02
(789 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45627| Best HMM Match : AAA (HMM E-Value=0) 140 9e-34
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.007
SB_9909| Best HMM Match : AAA (HMM E-Value=0) 36 0.049
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 34 0.15
SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0) 32 0.61
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_48561| Best HMM Match : AAA (HMM E-Value=0) 29 3.2
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12) 29 3.2
SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 29 4.3
SB_33442| Best HMM Match : AAA (HMM E-Value=0) 28 7.5
SB_32255| Best HMM Match : Spectrin (HMM E-Value=0.23) 28 7.5
SB_22720| Best HMM Match : KID (HMM E-Value=0.0014) 28 7.5
SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36) 28 7.5
SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_9672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_231| Best HMM Match : Granulin (HMM E-Value=5.4) 28 9.9
>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
Length = 628
Score = 140 bits (340), Expect = 9e-34
Identities = 61/69 (88%), Positives = 67/69 (97%)
Frame = +3
Query: 561 DTFMVRGGMRAVEFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDDIGGC 740
D F+VRGGMRAVEFKV+ETDPSP+CIVAPDTVIHC+GEP+KREEEEE+LN VGYDDIGGC
Sbjct: 104 DMFLVRGGMRAVEFKVIETDPSPYCIVAPDTVIHCEGEPVKREEEEESLNEVGYDDIGGC 163
Query: 741 RKQLAQIKE 767
RKQLAQIKE
Sbjct: 164 RKQLAQIKE 172
Score = 113 bits (273), Expect = 1e-25
Identities = 55/81 (67%), Positives = 63/81 (77%)
Frame = +3
Query: 171 KDRPNRLIVEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDNCPD 350
K RPNRL+VEEAV+DDNSVV +SQAKME+LQLFRGDTVL+KGK+RK+TVCIVLSDD D
Sbjct: 15 KSRPNRLLVEEAVNDDNSVVTMSQAKMEELQLFRGDTVLIKGKKRKDTVCIVLSDDTISD 74
Query: 351 EKIRMXXXXXXXXXXXXSDVV 413
+KIRM DVV
Sbjct: 75 DKIRMNRVVRMNLRVRLGDVV 95
>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 802
Score = 38.3 bits (85), Expect = 0.007
Identities = 18/44 (40%), Positives = 27/44 (61%)
Frame = +3
Query: 654 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPL 785
VIH G IK++ E A V + IGG + Q+ ++EM+E+PL
Sbjct: 235 VIHPFGSVIKKDSE--AKKGVSFQSIGGLKTQIQAVREMIEMPL 276
>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
Length = 400
Score = 35.5 bits (78), Expect = 0.049
Identities = 13/24 (54%), Positives = 20/24 (83%)
Frame = +3
Query: 714 VGYDDIGGCRKQLAQIKEMVELPL 785
V Y DIGGC++Q+ +++E+VE PL
Sbjct: 81 VTYSDIGGCKEQIDKLREVVETPL 104
>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 455
Score = 34.3 bits (75), Expect = 0.11
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 654 VIHCDGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPL 785
V+ D +P+ + E Y DIGG Q+ +IKE VELPL
Sbjct: 357 VLSDDADPMVTVMKLEKAPQESYADIGGLDTQIQEIKESVELPL 400
>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 779
Score = 33.9 bits (74), Expect = 0.15
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 672 EPIKREEEEEALNAVGYDDIGGCRKQLAQIKEMVELPL 785
+P+ E + Y D+GG +Q+ +++E++ELPL
Sbjct: 118 DPLVYNMSHEDPGNISYSDVGGLSEQIRELREVIELPL 155
>SB_35601| Best HMM Match : PKD_channel (HMM E-Value=0)
Length = 2497
Score = 31.9 bits (69), Expect = 0.61
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 189 DGWVCPCDRRIAVDKSSGLL 130
D WV PC+R +AVDK G+L
Sbjct: 1397 DRWVFPCNRWLAVDKDDGML 1416
>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 31.5 bits (68), Expect = 0.80
Identities = 11/23 (47%), Positives = 19/23 (82%)
Frame = +3
Query: 720 YDDIGGCRKQLAQIKEMVELPLR 788
Y+ +GG KQ+ +IKE++ELP++
Sbjct: 176 YEMVGGLDKQIKEIKEVIELPVK 198
>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
Length = 2021
Score = 29.5 bits (63), Expect = 3.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 714 VGYDDIGGCRKQLAQIKEMVELPL 785
V +D +GG KQ+ +KEM+ PL
Sbjct: 881 VKFDSVGGLNKQIQALKEMILFPL 904
>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
Length = 672
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 195 VEEAVSDDNSVVALSQAKMEQLQLFRGDTVLLKGKRRKETVCIVLSDDN 341
+EE + D +V+ S LQL R T +LK K ++ +++ D++
Sbjct: 141 IEERIEDSCFLVSTSTTNSTTLQLLRNMTGILKSDSDKVSIGVLVDDES 189
>SB_52195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1173
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -1
Query: 45 FNPSVTLPYFICSSI 1
FNPS+T P F+CS+I
Sbjct: 339 FNPSITTPQFLCSAI 353
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = -2
Query: 476 IINWQYVDSFS-IFH*RTRSYGYHIRKTHT 390
II W Y +S+ IFH TR +G H+ T T
Sbjct: 2525 IIAWVYPESWGPIFHYNTRGWGVHLWLTRT 2554
>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
Length = 369
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/30 (53%), Positives = 19/30 (63%)
Frame = +3
Query: 696 EEALNAVGYDDIGGCRKQLAQIKEMVELPL 785
EE N V Y +IGG Q +I+E VELPL
Sbjct: 156 EEKPN-VSYAEIGGMDIQKQEIREAVELPL 184
>SB_32255| Best HMM Match : Spectrin (HMM E-Value=0.23)
Length = 172
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 681 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 776
KREEE E L + + C+K+L ++E++E
Sbjct: 63 KREEELELLLETRTEKLSECKKRLLDLEEIIE 94
>SB_22720| Best HMM Match : KID (HMM E-Value=0.0014)
Length = 847
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +3
Query: 681 KREEEEEALNAVGYDDIGGCRKQLAQIKEMVE 776
KREEE E L + + C+K+L ++E++E
Sbjct: 664 KREEELELLLETRTEKLSECKKRLLDLEEIIE 695
>SB_8450| Best HMM Match : RRM_1 (HMM E-Value=1.7e-36)
Length = 328
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 402 SDVVSIAPCPSVKYGKRVHILPIDDSVEGLTGNLFEVYLKPYFXEAYRPI 551
S+ +I P P+ GK H+ V GL + ++ YF +AY P+
Sbjct: 81 SEADAIDPKPAAPIGKPPHLRVKKIFVGGLKPETSDEKIREYFGKAYAPV 130
>SB_38103| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 741
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 666 DGEPIKREEEEEALNAVGYDDIGGCRKQLAQIKEM 770
D + + EEEEE +G+D+ G ++L +I+E+
Sbjct: 255 DDDETEDEEEEEEQPVMGWDEYGTSPQRLQRIREL 289
>SB_9672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 27.9 bits (59), Expect = 9.9
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 597 EFKVVETDPSPFCIVAPDTVIHCDGEPIKREEEEEALNAVGYDD-IGGCRKQ 749
+++ + P PFCI+ VI G P+ R + + + N Y IG KQ
Sbjct: 117 QYREPQRPPPPFCILNVKKVIKHSGSPVYR-DPDSSQNRYQYSTLIGNSSKQ 167
>SB_231| Best HMM Match : Granulin (HMM E-Value=5.4)
Length = 85
Score = 27.9 bits (59), Expect = 9.9
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -2
Query: 476 IINWQYVDSFSIFH*RTRSYGYHIRKTH--TKVVSHD 372
+++ Q++D+ +FH RS +R TH +VV HD
Sbjct: 35 VVSNQFIDTALLFHFNHRSASDSVRLTHEQVQVVKHD 71
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,344,654
Number of Sequences: 59808
Number of extensions: 491237
Number of successful extensions: 1444
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1443
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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