Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_D01
         (426 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1...    32   0.043
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    26   2.1  
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    26   2.1  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    26   2.1  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   3.7  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    24   8.6  

>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
           Pop1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 31.9 bits (69), Expect = 0.043
 Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -3

Query: 121 NSSSNNEKTRKNFVPHYSKFSYPKLHK----CFRSENNSDH 11
           N   N+ KTR++F PH S  S+  LH+     F SEN S H
Sbjct: 199 NLLGNDSKTRQSFPPHSSSSSHNSLHEPVIYDFSSENPSIH 239


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -3

Query: 100 KTRKNFVPHYSKFSYPKLHKCFRSENNSD 14
           +T K  +P + +  YP LHK F SEN  D
Sbjct: 793 RTVKTLLPAFKEQVYPILHK-FVSENEKD 820


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 76  HYSKFSYPKLHKCFRSENNSD 14
           H SK+S P+LH  F    N+D
Sbjct: 142 HASKYSVPELHTTFLPNTNAD 162


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = -3

Query: 295 FTTSIIRDSFQAIHFIRITSKPHIPLVQRTTPSIS 191
           F   + RD +    F+    KPH  LV+ + PS++
Sbjct: 80  FDFDVCRDCYAKQAFLHPCPKPHFVLVRSSIPSVA 114


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 151 YMIKTPAR*TNSSSNNEKTRKNFVPHYSKFSYPKL 47
           Y IK P   TN S    K +  F+P Y+K   P+L
Sbjct: 408 YPIKPP---TNISEIPRKLKSGFIPPYAKRVVPRL 439


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 24.2 bits (50), Expect = 8.6
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 59  REFRIMWYEILPSFFIITAAVGLPGWGLY 145
           +EF  +W  IL + FII++   +   GLY
Sbjct: 342 KEFYELWNSILQNHFIISSRNIIDSLGLY 370


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,385,129
Number of Sequences: 5004
Number of extensions: 25493
Number of successful extensions: 56
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)