Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_C23
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    28   1.3  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    27   4.0  
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|...    26   5.4  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    26   7.1  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   7.1  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +2

Query: 329 LLKILLSETPGHSFQDLTSEKCNSLLVRAVCTILS 433
           +LKI L+  P   F DL +   +SLL R  CTILS
Sbjct: 734 VLKIALNHPP--YFDDLATTTFSSLLKRDECTILS 766


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 563 IQIHSFQNLSEVEAFYTRNIRILKDKYG 646
           I++H   + +E EA Y +N+  L+ +YG
Sbjct: 159 IRVHHLYHWAEFEARYRKNVADLQKRYG 186


>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
           Orc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 972

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 518 VDEHSSDTIEHFHRRIQIHSF 580
           VDE  SDT  H H+ +Q H F
Sbjct: 779 VDELLSDTRSHLHKLVQHHYF 799


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex subunit
            Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
 Frame = +2

Query: 161  LERELAGTRRLLWGDHV--KEDVFRRWAQGFQFSPDEPSALIQQEGGPCAAIAPVQGFLL 334
            L+++L+  R ++  D +  ++ V RR   GF  S D    +I+ +G     I+   G LL
Sbjct: 909  LKKKLSKARSIMQLDELNSRKRVLRRL--GFTTSDD----VIEVKGRVACEISSGDGLLL 962

Query: 335  KILLSETPGHSFQDLTSEKCNSLL 406
              L+       F DLT E+C +LL
Sbjct: 963  TELIFNG---MFNDLTPEQCAALL 983


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = +2

Query: 434 QCLAPKYNV-AVYRKNESGAETSGSNSVSVDE--HSSDTIEHFHRRIQIHSFQNLS 592
           QCL  K+N+  +Y+ N +    S    +   +  H +   +H H+ +  +S  NLS
Sbjct: 91  QCL--KHNIPCIYKSNSTKRSHSRHEEIHHQQQLHLNHQYQHQHKNVAANSIDNLS 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,386,669
Number of Sequences: 5004
Number of extensions: 70733
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)