Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_C19
(857 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_03_0017 + 8990852-8990938,8991056-8991243,8991687-8991795,899... 107 8e-24
02_05_1210 - 34954006-34955412 50 3e-06
05_07_0347 - 29440541-29440664,29440908-29441020,29441522-294416... 30 2.1
02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727 30 2.7
04_03_0073 - 10702352-10702619,10702702-10702836,10702915-10703594 29 4.7
07_01_0632 + 4729426-4731300 28 8.3
04_04_0585 - 26386248-26386271,26386510-26386699,26387363-263874... 28 8.3
>11_03_0017 +
8990852-8990938,8991056-8991243,8991687-8991795,
8992448-8992832,8993240-8993309,8993410-8993477,
8995009-8995124,8995211-8995317,8995488-8995627,
8995794-8996044
Length = 506
Score = 107 bits (258), Expect = 8e-24
Identities = 53/160 (33%), Positives = 92/160 (57%), Gaps = 4/160 (2%)
Frame = +3
Query: 207 DDIITNFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDRIE---VDLYIMGDT 377
DDI +++ T ++I + + +V LQFPD++L + V + ++ + V L++M DT
Sbjct: 3 DDIDARYEVPRTAEFIRARAYTRVALQFPDEMLRDAAAVAQALRRELGGGGVKLFVMADT 62
Query: 378 SYASCCIDSVAAMHVQANGIVHYGHKCFSKT-DIPVYMVLPKEKLDFDAAINTLKEKYDS 554
+Y SCC+D V A H+ A +VHYGH C S T ++P + V K LD DA +L E
Sbjct: 63 AYNSCCVDEVGASHIDAQCVVHYGHACMSPTSNLPAFFVFGKTPLDTDACGRSLLE-CSR 121
Query: 555 DDNMKLCLFYGAEFEHCNENITRKWFQKYPKSYICHIELE 674
+ + ++ +FYG E+ H +++ + Y KS+ +E++
Sbjct: 122 ESDKRILVFYGLEYAHALDDLKAVVAELY-KSHSRSVEVQ 160
>02_05_1210 - 34954006-34955412
Length = 468
Score = 49.6 bits (113), Expect = 3e-06
Identities = 33/133 (24%), Positives = 62/133 (46%), Gaps = 8/133 (6%)
Frame = +3
Query: 222 NFDIKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDRIEVD----LYIMGDTSYAS 389
NF++ +T I + LQ P+ LL S + + +E D + I+ D +Y +
Sbjct: 59 NFELPKTAHRIRSSGARRTALQLPEGLLLFSLPLSHLLAPFLEPDPSNDVLILADPTYGA 118
Query: 390 CCIDSVAAMHVQANGIVHYGHKCF---SKTDIPVYMVLPKEKLDFDAAINTLKEKY-DSD 557
CC+ A + A+ +VHYGH C + + +PV V + ++D + ++ + D
Sbjct: 119 CCLADRPAKALAADVLVHYGHSCLVPVTSSLLPVLYVFVEIRVDAQRLADAVRAAFPDPA 178
Query: 558 DNMKLCLFYGAEF 596
D +L + +F
Sbjct: 179 DAPRLAIAGTVQF 191
>05_07_0347 -
29440541-29440664,29440908-29441020,29441522-29441689,
29442341-29442391,29442518-29442555,29442885-29442978
Length = 195
Score = 30.3 bits (65), Expect = 2.1
Identities = 24/81 (29%), Positives = 34/81 (41%)
Frame = +3
Query: 231 IKETCKWIERKKFAKVCLQFPDDLLEVSCKVYKEIKDRIEVDLYIMGDTSYASCCIDSVA 410
I E ERK F V ++ E + K Y ++KDR + G + S V
Sbjct: 62 ISEILSRFERKGFKLVAIKLVVPSKEFAQKHYHDLKDR----PFFNGLCDFLSS--GPVL 115
Query: 411 AMHVQANGIVHYGHKCFSKTD 473
AM + G++ YG K TD
Sbjct: 116 AMVWEGEGVIKYGRKLIGATD 136
>02_05_0825 - 32042128-32042238,32042905-32043246,32043548-32043727
Length = 210
Score = 29.9 bits (64), Expect = 2.7
Identities = 9/18 (50%), Positives = 15/18 (83%)
Frame = -3
Query: 597 QILHHKRGITSCCHQNHI 544
Q+LH + G++SCC+Q H+
Sbjct: 182 QLLHQQCGLSSCCNQRHL 199
>04_03_0073 - 10702352-10702619,10702702-10702836,10702915-10703594
Length = 360
Score = 29.1 bits (62), Expect = 4.7
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = +1
Query: 406 WQLCMCRPMELCIMVTNAFQKLIYQFTWYCQKKNWIL 516
WQ C E+ + IY W+C+ K +I+
Sbjct: 230 WQWCQKNAPEVAFLDRQGMVNYIYDTLWFCRDKEYIM 266
>07_01_0632 + 4729426-4731300
Length = 624
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = -1
Query: 260 SFDPFACFLYIKIG 219
S DPF CFLYI IG
Sbjct: 239 SVDPFFCFLYISIG 252
>04_04_0585 - 26386248-26386271,26386510-26386699,26387363-26387463,
26387554-26387685,26387759-26387857,26387956-26388127,
26388217-26388512,26388601-26388726,26388848-26389062,
26389154-26389225,26389299-26389368,26389441-26389517,
26389605-26389923,26390034-26390225,26390321-26390551,
26390585-26390950,26392251-26392313,26392394-26392456,
26392544-26392642,26393497-26393523,26394299-26394358,
26395230-26396147,26396243-26397268
Length = 1645
Score = 28.3 bits (60), Expect = 8.3
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Frame = +3
Query: 258 RKKFAKVCLQFPDDLLEVSCKVYKEIKDRIEV---DLYIMGDTSYASCCIDSVAAMHVQA 428
RK L FP + LE +IKDR+ V L+ GD + I+ + ++Q
Sbjct: 1490 RKLHLSDMLFFPIEHLEHWFLFVVDIKDRMLVLLDSLHEKGDPYFED--IECLLINNLQT 1547
Query: 429 NGIVHYGHKCFSKTDIPVYMVLPKEKLDFDAAINTLK 539
+YG T VY +PK++ FD+ I +K
Sbjct: 1548 FWDSYYGSSIDFTTLKKVYPCVPKQRSCFDSGIFVMK 1584
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,540,105
Number of Sequences: 37544
Number of extensions: 442372
Number of successful extensions: 982
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 979
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2397465936
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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