Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_C15
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    35   0.015
SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|ch...    29   0.96 
SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    26   5.1  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 34.7 bits (76), Expect = 0.015
 Identities = 17/56 (30%), Positives = 30/56 (53%)
 Frame = +1

Query: 505 QRHQAKHRELFLSRHVETLPATHIRGKCTVTLLNETESLLSYLNKDDAFFYCLVFD 672
           QRH    R LF S H +      ++ KCTV   ++ E+L  Y ++  ++++  +FD
Sbjct: 157 QRHLTDTRLLFASMHSDIYNIGSVQEKCTVKHRSQIENLDEYKSQAKSYYFDRLFD 212


>SPBC725.12 |mug118||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 95

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +1

Query: 223 RRIEELNKTTSGNVEAKVLCFYRRRDLPNPLIQLADKHQMAQSEDSPVAMKLK 381
           +R+EEL +T    V  ++L  ++   L N   +L+DK +  +S  S +A  ++
Sbjct: 6   KRVEELGETKHRQVRQRILQEHKNDILENLAFELSDKVRRLRSNASLLASTIR 58


>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = -3

Query: 531 LAVFRLVPLLRRQAVCTWQF 472
           LAVFRL+P+L RQ V +  F
Sbjct: 30  LAVFRLLPILARQYVMSMLF 49


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,958
Number of Sequences: 5004
Number of extensions: 52042
Number of successful extensions: 131
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)