Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_C13
         (824 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    25   0.55 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    25   0.55 
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   2.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.9  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 protein.
          Length = 980

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 9/63 (14%)
 Frame = +1

Query: 217  TPIPSVDNTTICPDAFKCPD------LHPDPTMC--YYR-GASYTDRSPLPQNLIKNPCS 369
            T I S   TT  P+   C +       HPD   C  YY          P P NL+ NP  
Sbjct: 898  TSISSGQYTTKDPNEVTCDEEEGHISYHPDKADCRMYYMCEGERKHHMPCPSNLVFNPDQ 957

Query: 370  QAC 378
              C
Sbjct: 958  NVC 960


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 17/73 (23%), Positives = 25/73 (34%)
 Frame = +1

Query: 181 CNMSAFYLELGCTPIPSVDNTTICPDAFKCPDLHPDPTMCYYRGASYTDRSPLPQNLIKN 360
           CN    ++   C    +   T+ C +   C  +H         G    +      +   N
Sbjct: 324 CNCKLGFMGRHCESKVNFCATSPCQNGGVCTTIHAGHKCTCPEGFYGKNCEFSGYDCDSN 383

Query: 361 PCSQACSCRISDG 399
           PC     CRISDG
Sbjct: 384 PCQNGGVCRISDG 396



 Score = 23.8 bits (49), Expect = 1.7
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 3/80 (3%)
 Frame = +1

Query: 430 CVESFDSDLQECVKTYELDSCCSTANVCGKDAIATLKTCQVDGKTYREGEIFEPQN-TRK 606
           C++  +S +  C   +   +C +  N+C         TCQ D  T+       P   T K
Sbjct: 38  CIDGINSYICTCKPGFTGSNCQNRINLCDSSPCLNGATCQ-DHTTHYTCHC--PYGYTGK 94

Query: 607 TCICTSDW--SGSADNSAYC 660
            C    DW  +   +N A C
Sbjct: 95  DCGEYVDWCSTNPCENQATC 114


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/41 (26%), Positives = 15/41 (36%)
 Frame = +1

Query: 517 KDAIATLKTCQVDGKTYREGEIFEPQNTRKTCICTSDWSGS 639
           K    +LK    D  T + G   +       C C  DW G+
Sbjct: 137 KGKTCSLKDSHCDHTTCKNGGTCQDLGKTFMCRCPPDWEGT 177


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = +3

Query: 285  RPNDVLL*RRVIYGPVTLTAESDQEPVLPGVQLP 386
            R ND    +     P T      QEPVLP   +P
Sbjct: 2203 RDNDKTKPKPTTMKPTTTIGYEPQEPVLPAEVVP 2236


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,829
Number of Sequences: 336
Number of extensions: 4560
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22621642
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)