Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_C13
(824 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0697 + 5209325-5209557,5209690-5209749,5209894-5210038,521... 31 1.1
08_01_0201 + 1635964-1637010 31 1.5
10_08_0650 - 19591898-19593148 30 1.9
01_05_0246 + 19880364-19880565,19880721-19880801,19880891-198810... 29 3.4
07_03_0610 + 19932220-19933176,19933270-19933782 29 4.5
09_02_0032 + 3142842-3143148,3143321-3143363,3144117-3144420 29 5.9
06_03_0624 + 22849064-22849169,22850183-22850233,22850794-22851179 29 5.9
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 29 5.9
03_02_0627 + 9951391-9951523,9951615-9951684,9951829-9951856,995... 29 5.9
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 28 7.8
09_04_0161 - 15232074-15232139,15232299-15232406,15233417-152335... 28 7.8
03_05_0034 + 20064750-20065001,20065542-20065730,20066313-200665... 28 7.8
>02_01_0697 +
5209325-5209557,5209690-5209749,5209894-5210038,
5210149-5210306,5210990-5211071,5211154-5211220,
5211302-5211347,5211441-5211606,5211729-5211814,
5211916-5211996,5212084-5212144
Length = 394
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/66 (31%), Positives = 32/66 (48%)
Frame = +2
Query: 440 PSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWTAKRTGRGRFSSPRTQGRPASV 619
PS +R+ S T W + +Q A R + +PAKWT+ + P+ G A+V
Sbjct: 281 PSHGLARTRSNNTAWQTLGSQ---ADRNKENNMRPAKWTSHKI-------PQKVGSRAAV 330
Query: 620 HPTGVA 637
PT V+
Sbjct: 331 QPTRVS 336
>08_01_0201 + 1635964-1637010
Length = 348
Score = 30.7 bits (66), Expect = 1.5
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +2
Query: 602 GRPASVHPTGVAPRTTQLIAETSIAA 679
GRP SVHP APRT + +S AA
Sbjct: 84 GRPLSVHPPLAAPRTFSTVLRSSSAA 109
>10_08_0650 - 19591898-19593148
Length = 416
Score = 30.3 bits (65), Expect = 1.9
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +2
Query: 401 SHSSIAPQSTAWSPSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWT 556
SH+ P S A SP++ SR AS T W+ AA+ SA R + P WT
Sbjct: 349 SHAFALPASGAASPAS--SRIAS--TTWSDYAARSSSAHRGRLAVSSPCHWT 396
>01_05_0246 +
19880364-19880565,19880721-19880801,19880891-19881054,
19881784-19881835,19882110-19882462
Length = 283
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Frame = +1
Query: 544 CQVDGKTYREGEIFEPQNTRKT----CICTSDWSGSADNSAYCRDI 669
C + GK +G N R+T C CT D SA+ Y +DI
Sbjct: 79 CCIKGKLKHDGTSTSASNNRRTISEMCFCTKDIRLSAEVKNYIKDI 124
>07_03_0610 + 19932220-19933176,19933270-19933782
Length = 489
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -1
Query: 566 YVLPSTWQVFNVAIASLPQTFAVLQHESNSYVLTHSWRSESKDSTQSTA 420
YV+P WQVF +AS+ A + H+ + ++ + R +S+ S+ STA
Sbjct: 374 YVIPKGWQVF--WVASVTHMDAAIFHDPDKFLPS---RFDSQSSSPSTA 417
>09_02_0032 + 3142842-3143148,3143321-3143363,3144117-3144420
Length = 217
Score = 28.7 bits (61), Expect = 5.9
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +1
Query: 553 DGKTYREGEIFEPQNTRKTCI 615
DG+ + G +EP RKTCI
Sbjct: 101 DGEVFSVGSTYEPSKVRKTCI 121
>06_03_0624 + 22849064-22849169,22850183-22850233,22850794-22851179
Length = 180
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = +2
Query: 422 QSTAWSPSTPTSRSASKRTNWTHVAAQQMSAARTQSQ 532
+STA + STPT RS++ T +T ++Q+ + SQ
Sbjct: 141 RSTASTTSTPTGRSSTGATGYTSRSSQRRNVGWISSQ 177
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/104 (19%), Positives = 42/104 (40%)
Frame = +1
Query: 265 KCPDLHPDPTMCYYRGASYTDRSPLPQNLIKNPCSQACSCRISDGEPQFDCAAVDCVESF 444
+C HP PT+ R + T + + ++N C + +CR P + + +
Sbjct: 123 ECKYAHPHPTVAVDRDSKVTACA----DSLRNNCFRGRTCRYYHPPPHIQESLLRSIGVE 178
Query: 445 DSDLQECVKTYELDSCCSTANVCGKDAIATLKTCQVDGKTYREG 576
D ++ + + C +AN C + L+ C + + + G
Sbjct: 179 DPKVKMVCRDFTRGRCSRSANECRFLHHSPLEDCAIVCQDFLRG 222
>03_02_0627 +
9951391-9951523,9951615-9951684,9951829-9951856,
9952208-9952254,9952366-9952456,9952738-9952915,
9953626-9953713,9953788-9953869,9954195-9954270,
9954429-9954496,9954623-9954692,9955469-9955553,
9955671-9955764,9956289-9956372
Length = 397
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/42 (30%), Positives = 18/42 (42%)
Frame = +1
Query: 217 TPIPSVDNTTICPDAFKCPDLHPDPTMCYYRGASYTDRSPLP 342
TP P + D F+C D T+ + SY +PLP
Sbjct: 26 TPWPEFNEGISYIDTFRCADAGATTTLIEFYSTSYKSSAPLP 67
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 256 DAFKCPDLHPDPTMCYYRGASYTDRSPLPQNLIKNPCSQACS 381
D +C D HP +C SYT ++LI C Q+ S
Sbjct: 338 DIDECQDAHPCTGICINTQGSYTCTCQRGKHLIDGVCKQSSS 379
>09_04_0161 -
15232074-15232139,15232299-15232406,15233417-15233506,
15233617-15233733,15234408-15234527,15234930-15236168
Length = 579
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/57 (35%), Positives = 23/57 (40%)
Frame = +2
Query: 419 PQSTAWSPSTPTSRSASKRTNWTHVAAQQMSAARTQSQR*KPAKWTAKRTGRGRFSS 589
P S +PSTP SRS + N V S+ R S R W A R F S
Sbjct: 90 PSSRVSTPSTPASRSVTPVRN--TVTEGHKSSRRITSTRNTDGLWPAMRNLSSSFQS 144
>03_05_0034 +
20064750-20065001,20065542-20065730,20066313-20066511,
20069479-20069885
Length = 348
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Frame = +1
Query: 394 DGEPQFDCAAVDCVESFDSDLQ-ECVKTYELDSCCSTANVCGKDAIATLKTCQVDGKTYR 570
D +P A D +++ L+ +C T SC + +DA++ G+ +
Sbjct: 103 DAKPNHTLDAYDVIDAIKEKLEHKCPATV---SCADILAIAARDAVSLATKAVRQGRWSK 159
Query: 571 EGEIFEPQNTRK 606
+G ++E + R+
Sbjct: 160 DGNLYEVETGRR 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,527,442
Number of Sequences: 37544
Number of extensions: 530828
Number of successful extensions: 1687
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1687
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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