Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_C11
         (894 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo...    28   2.1  
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa...    27   2.7  
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual      27   3.6  
SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyc...    27   4.8  
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc...    27   4.8  
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy...    27   4.8  
SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.3  
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb...    26   6.3  
SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|c...    26   8.3  
SPCC4B3.01 ||SPCP25A2.01c|thiosulfate sulfurtransferase|Schizosa...    26   8.3  
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    26   8.3  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    26   8.3  

>SPAC17H9.11 |||cofilin/tropomyosin family
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
 Frame = +1

Query: 616 STEKKVLKISQTKYEEI------LKISKKYIFINQVDKSFHEAVDDLNQQDFVAV 762
           S+E ++  IS T  +EI      LK S  Y FI +VDK+  E V D    D  ++
Sbjct: 2   SSEARMFTISDTTMKEIDRFRLRLKKSVMYAFILKVDKATKEIVPDGEIMDLQSI 56


>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
           Swd2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 357

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 484 FYSMAQDKTKISLYDVKEIPHGDANDGVLHYYDSEIREVVKLQDSTEKKVLKIS 645
           F S+++ K KISLY++K        D  L +    +R +  ++ ST+ K L ++
Sbjct: 167 FASVSERKYKISLYNIKSFDARPFQDIPLTFLPPHVR-IANVEFSTDGKYLLLT 219


>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1489

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/97 (17%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
 Frame = +1

Query: 451  HTKNYDVFEGRFYSMAQDKTK-ISLYDVKEIPHGDANDGVLHYYDSEIREVVKLQDSTEK 627
            + +NYD+F+   +SM+  + K  +L ++ E+      +   +Y D      + +++ + +
Sbjct: 1258 NARNYDLFDDSIFSMSFAELKYTALSNIVEMEKLGFANRRNNYQDMVNSIALDIRNKSRR 1317

Query: 628  KVLKISQ--TKYEEILKISKKYIFINQVDKSFHEAVD 732
            ++ +  +    ++ +L + +K  F++   KS++E ++
Sbjct: 1318 RMQRQRELDAGHQSLLNLREKRAFLDSQLKSYNEYIE 1354


>SPAP27G11.06c |||AP-1 adaptor complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 162

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = -1

Query: 780 ICTITANSNKILLVQIIHSFME 715
           +C I  + N+++++++IH F+E
Sbjct: 69  VCGIEQDDNELIILEVIHKFVE 90


>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
           Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 815

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +1

Query: 559 DGVLHYYDSEIREVVKLQDST 621
           +G+L++YD++ RE++K   +T
Sbjct: 158 NGILYFYDTQTRELIKFLTNT 178


>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 756

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 652 KYEEILKISKKYIFINQVDKSFHEAVDDLNQQDFVAVSG 768
           KY  + +I+     I++  KSF+E V D  Q  F   SG
Sbjct: 167 KYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFKKESG 205


>SPCC330.07c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 782 IFAPSPLTATKSCWFKSSTASWKLLSTWFMKM 687
           I A + + +  + W + + ASW +L  WF  M
Sbjct: 243 ILAKATIHSKNAVWNQYTVASWVMLFMWFFYM 274


>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 827

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = -1

Query: 864 ILHHLDVKDIDXVVSGQNKKWHLAFSPHICTITANSNKILLVQIIHSFMETFINL 700
           +L  LD KD   VVS      H+   P   +   N + ILL  I+H   +  I++
Sbjct: 422 LLKGLDYKDYPTVVSRIRTLHHVKLHPDNKSRLENFSVILLQHILHLTRQPMISM 476


>SPBC1683.03c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
 Frame = -2

Query: 785 PIFAPSPLTATKSCWFKSSTASWKLLSTWFMKMY-FFDILRISS 657
           PI APS + +   C      A W     W   ++ F + LR ++
Sbjct: 296 PILAPSMMNSEMGCVLICVAAGWACFGIWMYYLWQFLENLRFAT 339


>SPCC4B3.01 ||SPCP25A2.01c|thiosulfate
           sulfurtransferase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -2

Query: 239 AHHQIRYSLPRRRKVLARL*LPCSILLPFETPENLAAHLRAPR 111
           AH +   ++P  R  LA   +P SI +PF   E  AA + AP+
Sbjct: 187 AHERFLGNVPESRPGLASGHIPTSINIPF--TETTAAGITAPK 227


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 532 KEIPHGDANDGVLHYYDSEIREVVKLQDSTEKKVLKISQTK 654
           KE+P  +  + V +  D +  ++ ++ D +EKK  K  + K
Sbjct: 216 KEVPEEEETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVK 256


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = +2

Query: 11  PMTDQEIEKEIEXANRKF*EL*SLFQFHFCFIMIEGRANELPDFQVFRTVIKYCMVII 184
           PM + + +K I     K  +   L QF F  I  +    E+PDF + R   ++  V++
Sbjct: 551 PMANVDTDKIIPKQFLKTIKRTGLGQFAFYEIRYDADGKEIPDFVLNREPYRHATVLV 608


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,615,958
Number of Sequences: 5004
Number of extensions: 76473
Number of successful extensions: 232
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)