Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_C10
(486 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 30 0.16
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 29 0.28
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 29 0.37
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 0.65
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 2.0
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch... 26 2.6
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl... 26 3.5
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 8.0
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 8.0
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual 25 8.0
>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1367
Score = 30.3 bits (65), Expect = 0.16
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 311 NFLRYSLLPTASTRERGRLEVRSALGTVHVICTVVDRFV 195
NF ++P STR+R + +R G +H+IC D +
Sbjct: 756 NFRVLDIIPFTSTRKRMSVIIRDEDGIIHLICKGADTVI 794
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 29.5 bits (63), Expect = 0.28
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = +1
Query: 106 PTLKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 270
PT++ T T ++ T T + +TTT+ + T + T T P + T+ LP++
Sbjct: 102 PTVETTTTPMVETT-TITPMVETTTITPMVEAMITLMEETMTTPMEETTTILPMA 155
Score = 25.4 bits (53), Expect = 4.6
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = +1
Query: 112 LKETATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLS 270
++ET T L A T+ + TTT T TV T T P + + LP++
Sbjct: 145 MEETTTILPMAAMTTPMEETTTTTPMVETTTIPTVE-TMTTPMVEAMTILPMA 196
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 29.1 bits (62), Expect = 0.37
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 124 ATNLLTTARTSLILPKTTTLMETATNLSTTVHITWTVPKADLTSSLPLSL 273
A+ L +++ T+ + P +T ET ++ S+ T T+ + TSS P+SL
Sbjct: 234 ASTLESSSLTNTVSPTESTFYETKSSTSSVP--TQTIDSSSFTSSTPVSL 281
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 28.3 bits (60), Expect = 0.65
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = +3
Query: 171 DYNPNG-NGYEPIDNGAYYVDRPQG---RPYFKPTPFPG 275
DYN N N Y PI N Y+++ G PYF PG
Sbjct: 119 DYNNNRKNFYPPIQNSTYFINATGGIDSMPYFGLNNAPG 157
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 2.0
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = +2
Query: 197 RTYRQRCILRGPSPRPTLLQAYPFPWCSRWEVKNIL 304
R + ++C R P RP + PW + + K I+
Sbjct: 1280 RDFIEQCFERDPEQRPRAVDLLTHPWITDFRKKTII 1315
>SPAC29B12.10c |||OPT oligopeptide transporter
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 851
Score = 26.2 bits (55), Expect = 2.6
Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = +1
Query: 91 LCWLWPTLKETATNLLTTARTSL-ILPKTTTLMETATNLSTTVHITWTV 234
LCW+WP K N L + L ILP T + N + W +
Sbjct: 361 LCWIWP--KNRVVNQLFGYNSGLGILPLTFDWQQVVYNSNPLASPWWVI 407
>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
Plh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 623
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 168 KDYNPNGNGYEPIDNGAYYVDRPQGRP 248
K Y +G G +P + G YY + P+G+P
Sbjct: 479 KIYCVHGVG-KPTERGYYYTNNPEGQP 504
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 24.6 bits (51), Expect = 8.0
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = +1
Query: 58 KNEILHDFRPRLCWLWPTLK--ETATNLLTTAR-TSLILPKTTT 180
K EI+H + R+C L+P + + L T R L LP+ +T
Sbjct: 209 KLEIIHPYYHRICTLFPQMNDWDKVVALKTLVRYARLTLPEPST 252
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 8.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 155 DVRAVVNRFVAVSLSVG 105
+VR V NRFVAV L G
Sbjct: 1056 NVRRVTNRFVAVKLDCG 1072
>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
Length = 248
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 91 LCWLWPTLKETATNLLTTARTS 156
+ W W TL TA +L+TA S
Sbjct: 1 MIWFWSTLLVTAIAVLSTANES 22
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,869
Number of Sequences: 5004
Number of extensions: 35959
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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