Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_C08
(839 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 314 1e-86
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 43 6e-05
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 43 6e-05
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 29 0.82
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha... 29 0.82
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 1.1
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ... 27 2.5
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 3.3
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 27 3.3
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 5.8
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 7.6
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 26 7.6
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 314 bits (771), Expect = 1e-86
Identities = 149/254 (58%), Positives = 189/254 (74%), Gaps = 3/254 (1%)
Frame = +1
Query: 85 KGGLRXLANXX-HXXRFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDM 261
K +R L N H R+G +F+VSGPVV A M G +MYELVRVG+ ELVGE+IR+ D
Sbjct: 9 KKAIRSLKNYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQDK 68
Query: 262 ATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKG 441
TIQVYEETSG+TVGDPV RTGKPLSVELGPG+ +I+DGIQRPLK I + +QSIYIP+G
Sbjct: 69 CTIQVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPRG 128
Query: 442 INVPSLAREVDWEFNP-LNVKVGSHITGGDLYGIVHENTLVK-HRMLVPPKAKGTVTYIA 615
IN SL RE W+F P ++++G H++GGD++G V EN+L H++++PP+A+GTVTYIA
Sbjct: 129 INTESLNREHKWDFTPNKDLRIGDHVSGGDVFGSVFENSLFNDHKIMLPPRARGTVTYIA 188
Query: 616 PAGNYKVTDVVLETEFDGERXKYSMLQVWXXXXXXXXTXXLPANHPLLTGXRVLXSLFPC 795
AG+Y V + +LE EF+G++ +SML W L AN PLLTG RVL +L+PC
Sbjct: 189 EAGSYHVDEKLLEVEFNGKKHSFSMLHTWPVRAARPVADNLTANQPLLTGQRVLDALYPC 248
Query: 796 VQGGTTXIPGAFGC 837
VQGGTT IPGAFGC
Sbjct: 249 VQGGTTAIPGAFGC 262
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 42.7 bits (96), Expect = 6e-05
Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
Frame = +1
Query: 130 FGYVFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGVT 300
+ V +++GP+V + + E+V + + G+++ + G A +QV+E TSGV
Sbjct: 24 YNTVNSITGPLVILDNIRRPQYNEIVNLNLPDGSVRSGQVLEVAGHKAIVQVFEGTSGVD 83
Query: 301 VGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL-KDINELTQSIYIPKGINVPSLAR 465
V + TG + + + +LG +F+G P+ K N L + G + AR
Sbjct: 84 VRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDKGPNLLAEDYLDINGSPINPYAR 140
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 42.7 bits (96), Expect = 6e-05
Identities = 23/73 (31%), Positives = 37/73 (50%)
Frame = +1
Query: 250 EGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIY 429
E + TI + + T G+ G V+ TG P+S+ +GPG LG I + I P+ + + Y
Sbjct: 102 ENTVRTIAM-DGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKY 160
Query: 430 IPKGINVPSLARE 468
P + PS +
Sbjct: 161 SPIHADAPSFEEQ 173
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 29.1 bits (62), Expect = 0.82
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 316 VLDHLQLHLKFLRIPGWWPC 257
V+D L + LR+P WWPC
Sbjct: 67 VVDISNLVIYALRVPNWWPC 86
>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 29.1 bits (62), Expect = 0.82
Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Frame = +1
Query: 349 GPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWEFNPLNVKVGSHITGGD 528
G ++ S+ + R LKDI T+++ + S A ++D + P+ K SH+
Sbjct: 264 GQELIPSVIGPMARSLKDIEFFTETV-------IASEAWKIDSKLLPIPWKNQSHLKSKK 316
Query: 529 L-YGIVHENTLVK-HRMLVPPKAKGTVTYIAPAGNYKVTDVVLETEFD 666
L +G++ + +VK H ++ +A V + Y+V ++ + + D
Sbjct: 317 LIFGVLKTDGIVKPHPPII--RALNEVVAVLEKSGYEVIEISIPFQKD 362
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -1
Query: 383 IPSKMEPKIPGPSSTDKGFPVRSTGSPTVTPE 288
IPS + P P T GFP R PT+ P+
Sbjct: 368 IPSTLPPADGVPKPTPDGFPRRFERDPTIPPD 399
>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 761
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = -3
Query: 249 KTDNLTDEFIVTDTDQLVHSRSGHFFGSDDGSRYGEDISEPXXMXXIGERP 97
+T +L E DTD+ VHS+S GS+ S D E + +G P
Sbjct: 180 RTPSLVPEHYFDDTDKSVHSKSSS--GSNSLSEASNDDLESSIIQIVGGLP 228
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.1 bits (57), Expect = 3.3
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = -1
Query: 191 ADPDIFSAVTTGPDTAKTYPN 129
AD +F AV PDTAK YPN
Sbjct: 33 ADAVVFKAVGVAPDTAK-YPN 52
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 27.1 bits (57), Expect = 3.3
Identities = 22/111 (19%), Positives = 47/111 (42%)
Frame = +1
Query: 139 VFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGVTVGDPVL 318
VF++ +++ ++S + +Y +V V G + + Q+ E+ L
Sbjct: 208 VFSLLNCIISYGRISSAVLYSIVEVVCRAKFGLVA---SSQSAQQIVEKLLKTATKYEAL 264
Query: 319 RTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREV 471
+ K + E G +I GIQ ++ +S+Y +G+ + L R +
Sbjct: 265 NSLKRIMEETDEGSYIAIMGGIQIVSALFTDIPRSVYCTRGMLLGFLQRSL 315
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 26.2 bits (55), Expect = 5.8
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +1
Query: 250 EGDMATIQVYEETS-GVTVGDPVLRTGKPLSVE 345
E D A++ + T+ +T DPV + KPL++E
Sbjct: 572 ENDKASVSITTTTTPSITPADPVPTSPKPLAIE 604
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/44 (34%), Positives = 18/44 (40%)
Frame = -1
Query: 602 TVPLALGGTNILCLTRVFSCTIPYKSPPVMWDPTLTFNGLNSQS 471
TVP T + S ++PY S PV P T N S S
Sbjct: 412 TVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -3
Query: 69 RVMXEPRRERWKRRTEKHRPAE 4
+V+ PR+ R+KR+ +K +P E
Sbjct: 311 KVVKPPRKSRFKRKKKKEQPEE 332
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,273,449
Number of Sequences: 5004
Number of extensions: 65828
Number of successful extensions: 208
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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