Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_C08
         (839 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                166   2e-41
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.50 
SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)                   29   6.2  
SB_37175| Best HMM Match : GvpH (HMM E-Value=2.5)                      29   6.2  

>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score =  166 bits (404), Expect = 2e-41
 Identities = 71/112 (63%), Positives = 85/112 (75%)
 Frame = +1

Query: 502 VGSHITGGDLYGIVHENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVVLETEFDGERXK 681
           +G HITGGD+YG V ENT +KH +++ PKAKGT+TYIAP GNY + D +LE +FDGE+ K
Sbjct: 1   IGDHITGGDIYGYVQENTFIKHHIMLHPKAKGTITYIAPQGNYYIEDTILEIDFDGEKSK 60

Query: 682 YSMLQVWXXXXXXXXTXXLPANHPLLTGXRVLXSLFPCVQGGTTXIPGAFGC 837
           + MLQVW        T  + ANHPLLTG RVL +LFPCVQGGTT IPGAFGC
Sbjct: 61  HCMLQVWPVRQMRPVTDKMAANHPLLTGQRVLDALFPCVQGGTTAIPGAFGC 112


>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +1

Query: 139 VFAVSGPVVTAEKMSGSAMYELVRVGY---NELVGEIIRLEGDMATIQVYEETSGVTVGD 309
           V  V+GP+V  + +      E+V +     ++  GE++ + G  A +QV+E TSG+    
Sbjct: 17  VSGVNGPLVILDNVKFPKFAEIVTLTLQDGSQRSGEVLEVSGSKAVVQVFEGTSGIDAKH 76

Query: 310 PVLR-TGKPLSVELGPGILGSIFDG 381
                TG  L   +   +LG +F+G
Sbjct: 77  TTCEFTGDILRTPVSEDMLGRVFNG 101


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 32.3 bits (70), Expect = 0.50
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +1

Query: 241 IRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 396
           + LE D   + V+     +  GD V RTG  + V +G  +LG + D +  P+
Sbjct: 3   LNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPI 54


>SB_45482| Best HMM Match : BTB (HMM E-Value=5.6e-11)
          Length = 3037

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 77   WRAKAA*GRSPMXXMXXGSDMSSPYL 154
            WRA+++ G+SP+  M   SDM +P L
Sbjct: 1881 WRAQSSVGQSPITPMPHYSDMDTPQL 1906


>SB_37175| Best HMM Match : GvpH (HMM E-Value=2.5)
          Length = 340

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 77  WRAKAA*GRSPMXXMXXGSDMSSPYL 154
           WRA+++ G+SP+  M   SDM +P L
Sbjct: 312 WRAQSSVGQSPITPMPHYSDMDTPQL 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,214,060
Number of Sequences: 59808
Number of extensions: 554559
Number of successful extensions: 1459
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1279
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1457
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2371447782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)