Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_C08
(839 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 351 3e-97
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 42 4e-04
AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily a... 38 0.012
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 36 0.027
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 36 0.047
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 36 0.047
AL032656-3|CAD12890.1| 731|Caenorhabditis elegans Hypothetical ... 30 2.4
AF416781-1|AAL38510.1| 731|Caenorhabditis elegans PH domain pro... 30 2.4
AF324505-1|AAL49495.1| 731|Caenorhabditis elegans CED-12 protein. 30 2.4
Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical pr... 28 9.5
Z81517-3|CAB04210.1| 802|Caenorhabditis elegans Hypothetical pr... 28 9.5
L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein ( Caeno... 28 9.5
AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein ... 28 9.5
AF022981-4|AAG24205.1| 602|Caenorhabditis elegans Hypothetical ... 28 9.5
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 351 bits (864), Expect = 3e-97
Identities = 162/237 (68%), Positives = 195/237 (82%), Gaps = 1/237 (0%)
Frame = +1
Query: 130 FGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGVTVGD 309
+G+V+ VSGPVVTAEKM+GSAMYELVRVG+ ELVGEIIRLEGD ATIQVYEETSGVT+GD
Sbjct: 7 YGFVYGVSGPVVTAEKMAGSAMYELVRVGHQELVGEIIRLEGDYATIQVYEETSGVTIGD 66
Query: 310 PVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWEF-N 486
PVLRTGKPLSVELGPGI+GSIFDGIQRPLKDI ++TQSIYIPKG++ +L+RE W+F
Sbjct: 67 PVLRTGKPLSVELGPGIMGSIFDGIQRPLKDIADITQSIYIPKGVSTNALSREARWDFVV 126
Query: 487 PLNVKVGSHITGGDLYGIVHENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVVLETEFD 666
+++VG H+TGGD+ G V EN L+KH++L+PP A GT+T++AP+G Y V D +LE EF
Sbjct: 127 SKDLRVGGHVTGGDIIGTVDENLLIKHKILLPPSACGTITFVAPSGQYTVEDTLLELEFA 186
Query: 667 GERXKYSMLQVWXXXXXXXXTXXLPANHPLLTGXRVLXSLFPCVQGGTTXIPGAFGC 837
G + K+SMLQ+W T L AN+PLL G RVL +LFPCVQGGTT IPGAFGC
Sbjct: 187 GRKQKFSMLQIWPVRSPRPVTEKLAANNPLLCGQRVLDALFPCVQGGTTAIPGAFGC 243
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 4/90 (4%)
Frame = +1
Query: 139 VFAVSGPVVTAEKMSGSAMYELVRVGY---NELVGEIIRLEGDMATIQVYEETSGVTVGD 309
V V+GP+V + E+V++ ++ G+++ + + A +QV+E TSG+ +
Sbjct: 32 VCGVNGPLVILNDVKFPQFSEIVKITLPDGSKRSGQVLEISKNKAVVQVFEGTSGIDAKN 91
Query: 310 PVLR-TGKPLSVELGPGILGSIFDGIQRPL 396
+ TG L + +LG IF+G +P+
Sbjct: 92 TICEFTGDILRTPVSEDMLGRIFNGSGKPI 121
>AC006708-2|AAF60418.1| 501|Caenorhabditis elegans Temporarily
assigned gene nameprotein 300 protein.
Length = 501
Score = 37.5 bits (83), Expect = 0.012
Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 4/90 (4%)
Frame = +1
Query: 139 VFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGVTVGD 309
VF V+GP+V + E+V++ +G+++ + A +QV+E T+GV
Sbjct: 44 VFGVNGPLVIVHNVKFPMFNEIVKITLPNGQIRMGQVLESSKNKAVVQVFEGTTGVDAKF 103
Query: 310 PVLR-TGKPLSVELGPGILGSIFDGIQRPL 396
TG + +LG IF+G +P+
Sbjct: 104 TTCEFTGDIFRSPVSLDMLGRIFNGSGKPI 133
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 36.3 bits (80), Expect = 0.027
Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 5/129 (3%)
Frame = +1
Query: 133 GYVFAVSGPVVTAE--KMSGSAMYELVRVGYN-ELVGEIIRLEGD-MATIQVYEETSGVT 300
G + AV G VV + + + L VG + L+ E+ + GD + + T G+
Sbjct: 70 GRIVAVIGAVVDVQFDENLPPILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLV 129
Query: 301 VGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAR-EVDW 477
G PV TG P+ + +GP LG I + I P+ + + + P V+
Sbjct: 130 RGQPVADTGDPIKIPVGPETLGRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQ 189
Query: 478 EFNPLNVKV 504
E +KV
Sbjct: 190 EILVTGIKV 198
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 35.5 bits (78), Expect = 0.047
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 232 GEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 396
G + L+ D + V+ + GD V RTG + V +G G+LG + D + P+
Sbjct: 62 GMAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 116
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 35.5 bits (78), Expect = 0.047
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +1
Query: 232 GEIIRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 396
G + L+ D + V+ + GD V RTG + V +G G+LG + D + P+
Sbjct: 89 GMAMNLDVDNVGVVVFGNDKVIREGDIVKRTGAIVDVPVGDGLLGRVVDALGNPI 143
>AL032656-3|CAD12890.1| 731|Caenorhabditis elegans Hypothetical
protein Y106G6E.5 protein.
Length = 731
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 478 EFNPLNVKVGSHITGGDLYGIVHENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVV 648
E P++ + H+ G + I E T+ HR ++P A TV K+TDVV
Sbjct: 9 ELQPVDTSLPEHVVKGAVV-IDKEFTIWNHRAVIPSNALHTVFITINLLEQKLTDVV 64
>AF416781-1|AAL38510.1| 731|Caenorhabditis elegans PH domain
protein CED-12 protein.
Length = 731
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 478 EFNPLNVKVGSHITGGDLYGIVHENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVV 648
E P++ + H+ G + I E T+ HR ++P A TV K+TDVV
Sbjct: 9 ELQPVDTSLPEHVVKGAVV-IDKEFTIWNHRAVIPSNALHTVFITINLLEQKLTDVV 64
>AF324505-1|AAL49495.1| 731|Caenorhabditis elegans CED-12 protein.
Length = 731
Score = 29.9 bits (64), Expect = 2.4
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = +1
Query: 478 EFNPLNVKVGSHITGGDLYGIVHENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVV 648
E P++ + H+ G + I E T+ HR ++P A TV K+TDVV
Sbjct: 9 ELQPVDTSLPEHVVKGAVV-IDKEFTIWNHRAVIPSNALHTVFITINLLEQKLTDVV 64
>Z83115-4|CAB05557.3| 422|Caenorhabditis elegans Hypothetical
protein K11D2.3a protein.
Length = 422
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 377 SKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSSYTWMV 264
+ +E IP PS D S GS TPE S++ W +
Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTI 344
>Z81517-3|CAB04210.1| 802|Caenorhabditis elegans Hypothetical
protein F28B1.3 protein.
Length = 802
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Frame = -3
Query: 279 VYLD----GGHVTFKTDNLTDEFIVTDTDQLVHSRSGHF 175
VY+D G + + DN T EF+ DTD V H+
Sbjct: 283 VYMDRVSTDGRLKYLIDNCTSEFVCGDTDTFVVFNMNHY 321
>L26291-1|AAA72418.1| 422|Caenorhabditis elegans protein (
Caenorhabditis elegans(unc-101) mRNA, complete cds. ).
Length = 422
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = -1
Query: 377 SKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSSYTWMV 264
+ +E IP PS D S GS TPE S++ W +
Sbjct: 307 NNVEIIIPVPSDADSPKFKTSIGSVKYTPEQSAFVWTI 344
>AF490975-1|AAQ06433.1| 703|Caenorhabditis elegans ABC7 protein
protein.
Length = 703
Score = 27.9 bits (59), Expect = 9.5
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Frame = +1
Query: 295 VTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREVD 474
+T+GD +L + + LGS++ +++ L D+N++ + + I + A+ ++
Sbjct: 367 LTIGDLILANTLLFQLSIPLNFLGSVYREVRQGLVDMNQMFSLLTLKPKIVEAADAKRLE 426
Query: 475 WEFNPLNVKVGS-HITGGDLYGIVHENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVVL 651
N +++K + H +G + E ++K L P K V + +G+ K T V L
Sbjct: 427 IVDNDISLKFENVH------FGYLPEKPILKGLDLEIPVGK-KVAIVGGSGSGKSTIVRL 479
>AF022981-4|AAG24205.1| 602|Caenorhabditis elegans Hypothetical
protein W03F9.10 protein.
Length = 602
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = -3
Query: 168 SDDGSRYGEDISEPXXMXXIGERPQAAFARHFERVMXEPRRERWKRRTEK 19
S+DG YG +S+ +G+ QA ER++ E ER K TE+
Sbjct: 102 SEDGFSYGHHVSKGEKKDDLGKVGQA------ERIIQEEMEERAKENTEE 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,609,591
Number of Sequences: 27780
Number of extensions: 389936
Number of successful extensions: 1069
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -