Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_C08
         (839 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   1.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    24   1.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.0  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   2.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    23   4.6  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    23   4.6  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   4.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +1

Query: 373 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 480
           +DG Q  L+ I+E+     +  G+++      V+W+
Sbjct: 172 YDGFQVDLRHIDEIRGKNVVDIGVDLSEFYTSVEWD 207


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 696 LQHAVLXPLTVELRLQHHVGDFVV 625
           L HA    L V   LQ H+G+F++
Sbjct: 195 LSHAEYSMLLVYFHLQRHMGNFLI 218


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 361 LGS-IFDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 480
           LGS  +DG +  L+ ++E + S  +  G+++      V+W+
Sbjct: 171 LGSWTYDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWD 211


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 373 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 480
           ++G Q  LK + +   S  + KGI++      V+W+
Sbjct: 181 YNGAQVDLKHMKQEAGSNLVAKGIDLSDFYLSVEWD 216


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.5
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +1

Query: 373 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 480
           +DG +  L+ ++E + S  +  G+++      V+W+
Sbjct: 176 YDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWD 211


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +2

Query: 149 YLDPSSLPKKCPDLLCTSWSVSVTMNSSVRLSVLKVTWPPSRYTKKLQV 295
           +LD S++P +       S  V+  +  + + S +  + PP  YTK + +
Sbjct: 264 WLDQSAVPAR------VSLGVTTLLTMATQTSGINASLPPVSYTKAIDI 306


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +2

Query: 149 YLDPSSLPKKCPDLLCTSWSVSVTMNSSVRLSVLKVTWPPSRYTKKLQV 295
           +LD S++P +       S  V+  +  + + S +  + PP  YTK + +
Sbjct: 264 WLDQSAVPAR------VSLGVTTLLTMATQTSGINASLPPVSYTKAIDI 306


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +1

Query: 136 YVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATI 270
           Y+F   G V  A        YE+ R    +L+ EI+  E D  T+
Sbjct: 407 YLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILERENDSGTL 451


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 227,219
Number of Sequences: 438
Number of extensions: 4747
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26945694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)