Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_C05
(853 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039041-3|AAB94192.1| 183|Caenorhabditis elegans Hypothetical ... 87 2e-17
AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical ... 30 2.4
AL110478-1|CAB54340.2| 537|Caenorhabditis elegans Hypothetical ... 29 4.2
AC024757-1|AAF59450.3| 490|Caenorhabditis elegans Hypothetical ... 29 4.2
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr... 29 5.5
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr... 29 5.5
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein. 29 5.5
AF016688-5|AAB66073.1| 666|Caenorhabditis elegans Hypothetical ... 29 5.5
AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical ... 28 7.3
Z99276-2|CAB16482.1| 388|Caenorhabditis elegans Hypothetical pr... 28 9.7
U00049-6|AAM22030.1| 711|Caenorhabditis elegans Hypothetical pr... 28 9.7
AL023843-2|CAA19523.1| 388|Caenorhabditis elegans Hypothetical ... 28 9.7
>AF039041-3|AAB94192.1| 183|Caenorhabditis elegans Hypothetical
protein W03F8.4 protein.
Length = 183
Score = 86.6 bits (205), Expect = 2e-17
Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
Frame = +1
Query: 115 KTTLKIYLYKNVQNIEEIRNHITNGEWNCAIIKPSLILDPFQXXXXXXXXXXXXKFSTMV 294
+ T ++ L+K+V+N E+ + G+ + A+I+ L+L+PF + M
Sbjct: 19 RKTCRVCLFKDVKNAAELSQQLKEGKIDAALIRAELVLEPFVLLAAANRAVHQSAHNRMS 78
Query: 295 TRTVFGEILYNLSLTKNITQSLSKFGI-EKSHDLLVCFLVTNEIDCRPEILPEIKGEQCS 471
R++ E++Y+LS ++NIT SL FGI E S ++ + ++ IKG
Sbjct: 79 CRSLAAELVYSLSPSRNITDSLVTFGIAEHSTAIIAAIFDDDSGKAMKKLAKAIKGTPVP 138
Query: 472 ITE-LCNFTNLKDVKSVYKLNN-LKSDEGLLDIIVSRMTTKNFVS 600
+ E L F N+ +K VY++ N +EGL D IVSRM +K+FVS
Sbjct: 139 LMEGLPKFANVNMIKKVYQVGNPAFVEEGLSDHIVSRMVSKDFVS 183
>AC006696-3|AAF39984.1| 391|Caenorhabditis elegans Hypothetical
protein W08E12.7 protein.
Length = 391
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +1
Query: 325 NLSLTKNITQSLSKFGIEKSHDLLVCFLVTNEIDCRPEIL 444
N ++TKNI ++ ++FG+ ++L L NEID +I+
Sbjct: 174 NTTITKNIDKTAAEFGLTPIENMLSHQLERNEIDGEKKII 213
>AL110478-1|CAB54340.2| 537|Caenorhabditis elegans Hypothetical
protein Y26D4A.2 protein.
Length = 537
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 79 LEHFTCVLAPETKTTLKIYLYKNVQNIEEIRNHITNGEWNCA 204
LE F CV+A ++ + YL++ +I+EI+++ + GE A
Sbjct: 58 LEEFDCVVAYQSNASDPCYLFQ-YDSIQEIKSNASGGEGQVA 98
>AC024757-1|AAF59450.3| 490|Caenorhabditis elegans Hypothetical
protein Y37E11AL.5 protein.
Length = 490
Score = 29.1 bits (62), Expect = 4.2
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Frame = -2
Query: 480 FCNRTLFTFYFGKYFRSAIYFICN*EAYE*IMAFFYSKLA*TLCYIFGKR*IVQ-NFSEH 304
FC+ L F+F ++ AI+F C + + ++AFF++ Y+F R ++Q F +
Sbjct: 351 FCS-ALLLFFFREHSPMAIFFFCLFQFFHVVIAFFFAS------YLFRLRFLLQRGFDSN 403
Query: 303 SSRNHCTKFRCDNCSVRRHSHLK 235
S + + R + ++ H K
Sbjct: 404 DSTDSLERKRDISRALLEHVDTK 426
>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
F39B2.4b protein.
Length = 1589
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +1
Query: 388 DLLVCFLVTNEIDCRPEILPEIKGEQCSITELCNFTNLKDVKSVYKLNNLKSDEGLLDII 567
D L+C + NE PE I+ ++ + +F + +K++ K ++ + +++
Sbjct: 935 DALICIQIANEFILTPEFQERIRWYHQNVPKKDHFPT-EYIKAIVKYHDAFPEFEACELV 993
Query: 568 VSRMTTKN--FVSY*N*VMQFLLPTPQSYTHI 657
S ++ N +Y +++ LLP Y H+
Sbjct: 994 RSYDSSSNVHMPTYYGCLIERLLPIMDQYLHV 1025
>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
F39B2.4a protein.
Length = 1587
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +1
Query: 388 DLLVCFLVTNEIDCRPEILPEIKGEQCSITELCNFTNLKDVKSVYKLNNLKSDEGLLDII 567
D L+C + NE PE I+ ++ + +F + +K++ K ++ + +++
Sbjct: 933 DALICIQIANEFILTPEFQERIRWYHQNVPKKDHFPT-EYIKAIVKYHDAFPEFEACELV 991
Query: 568 VSRMTTKN--FVSY*N*VMQFLLPTPQSYTHI 657
S ++ N +Y +++ LLP Y H+
Sbjct: 992 RSYDSSSNVHMPTYYGCLIERLLPIMDQYLHV 1023
>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
Length = 1587
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/92 (20%), Positives = 43/92 (46%), Gaps = 2/92 (2%)
Frame = +1
Query: 388 DLLVCFLVTNEIDCRPEILPEIKGEQCSITELCNFTNLKDVKSVYKLNNLKSDEGLLDII 567
D L+C + NE PE I+ ++ + +F + +K++ K ++ + +++
Sbjct: 933 DALICIQIANEFILTPEFQERIRWYHQNVPKKDHFPT-EYIKAIVKYHDAFPEFEACELV 991
Query: 568 VSRMTTKN--FVSY*N*VMQFLLPTPQSYTHI 657
S ++ N +Y +++ LLP Y H+
Sbjct: 992 RSYDSSSNVHMPTYYGCLIERLLPIMDQYLHV 1023
>AF016688-5|AAB66073.1| 666|Caenorhabditis elegans Hypothetical
protein F18A12.7 protein.
Length = 666
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/51 (23%), Positives = 27/51 (52%)
Frame = -3
Query: 167 ISSMFCTFL*RYIFNVVFVSGAKTQVKCSSXILXLAIV*KNLAQTLLIANE 15
+S ++C F YI VF++G + K + + ++ A+T+L++ +
Sbjct: 299 LSRLYCEFASNYIIGYVFITGGNARSKVTRGVFPSSVA----AETILVSGQ 345
>AL110477-5|CAB54329.1| 314|Caenorhabditis elegans Hypothetical
protein Y113G7B.7 protein.
Length = 314
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 430 RPEILPEIKGEQCSITELCNFTNLKDVKSVYKLNNLKSDEGL 555
+P +L EI G +C L NFTN+ +V ++++L K + L
Sbjct: 178 KPRVLEEI-GIRC----LANFTNISEVSNLFELEQWKKAKSL 214
>Z99276-2|CAB16482.1| 388|Caenorhabditis elegans Hypothetical
protein Y52D3.1a protein.
Length = 388
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 404 KHTSKSWLFSIPNLLKLCVIFLVSDKLYKISP 309
K +S L PN+++LC F+ +Y+I+P
Sbjct: 97 KESSNLRLMHHPNIIELCECFVYERSIYQITP 128
>U00049-6|AAM22030.1| 711|Caenorhabditis elegans Hypothetical
protein C18F10.2 protein.
Length = 711
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 327 IVQNFSEHSSRNHCTKFRCDNCSVRRHSHLKWI*DQARLN 208
I Q F EH K RC+NC+ + + + DQ +++
Sbjct: 285 IGQFFGEHPRSKRTPKPRCENCTEEEYEDVTPLSDQVKMD 324
>AL023843-2|CAA19523.1| 388|Caenorhabditis elegans Hypothetical
protein Y52D3.1a protein.
Length = 388
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -3
Query: 404 KHTSKSWLFSIPNLLKLCVIFLVSDKLYKISP 309
K +S L PN+++LC F+ +Y+I+P
Sbjct: 97 KESSNLRLMHHPNIIELCECFVYERSIYQITP 128
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,634,694
Number of Sequences: 27780
Number of extensions: 396159
Number of successful extensions: 984
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 982
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2118983636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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