Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_C04
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal prot...   113   9e-27
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...   111   3e-26
SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual        28   0.57 
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    26   1.7  
SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase Ubp4|Schizos...    26   2.3  
SPBC29A3.05 |||chromatin remodeling complex subunit|Schizosaccha...    26   2.3  
SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3 ...    25   3.0  
SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr 1||...    25   4.0  
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos...    24   7.0  
SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr 2...    24   7.0  
SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyc...    24   7.0  
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    24   7.0  

>SPBC800.04c |rpl4301|rpl43-1, rpl43, rpl37a-1|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  113 bits (272), Expect = 9e-27
 Identities = 48/86 (55%), Positives = 66/86 (76%), Gaps = 2/86 (2%)
 Frame = +3

Query: 63  KRLELLGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRT 236
           K++ + GKYG RYGASLR+ V+K+EV QH++Y C FCG++ +KR+  GIW C  K CK+ 
Sbjct: 6   KKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRNTVKRTAAGIWCCNGKGCKKV 65

Query: 237 VAGGAWVFSTTAASSCRSAVRRLREV 314
           +AGGAW  +T AA+S RS +RRLRE+
Sbjct: 66  LAGGAWTVTTAAATSARSTIRRLREM 91


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score =  111 bits (268), Expect = 3e-26
 Identities = 48/86 (55%), Positives = 65/86 (75%), Gaps = 2/86 (2%)
 Frame = +3

Query: 63  KRLELLGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSC--KRCKRT 236
           K++ + GKYG RYGASLR+ V+K+EV QH++Y C FCG+  +KR+  GIW C  K C +T
Sbjct: 6   KKVGVTGKYGVRYGASLRRDVRKIEVQQHSRYQCPFCGRLTVKRTAAGIWKCSGKGCSKT 65

Query: 237 VAGGAWVFSTTAASSCRSAVRRLREV 314
           +AGGAW  +T AA+S RS +RRLRE+
Sbjct: 66  LAGGAWTVTTAAATSARSTIRRLREM 91


>SPBC4F6.05c |||lectin |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 27.9 bits (59), Expect = 0.57
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -3

Query: 241 ATVLLHRLQDQMPTQERFIASLPQNEQVYFACWVTS 134
           +T +L ++  Q+ T   F+A + +NE  +FA W TS
Sbjct: 69  STSVLRQVGWQLSTS--FVAHVSENENTFFAIWYTS 102


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 26.2 bits (55), Expect = 1.7
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 144 QHAKYT-CSFCGKDAMKRSCVGIWSCKRCKR 233
           +H K T C  C +  +K  C  +W C+ CK+
Sbjct: 15  RHRKITSCRECHR--LKLKCDRVWPCENCKK 43


>SPBC18H10.08c |ubp4||ubiquitin C-terminal hydrolase
           Ubp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 94  VPYLPSNSNLFGTFGHFGK 38
           + Y+PSN NLF    H+G+
Sbjct: 352 IGYIPSNYNLFAFICHYGQ 370


>SPBC29A3.05 |||chromatin remodeling complex
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +3

Query: 153 KYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 242
           KY C  CG     + C  I S  RC +  A
Sbjct: 110 KYACQNCGTSYCSKGCEVIHSETRCMKVYA 139


>SPAP27G11.04c |||tRNA specific adenosine deaminase subunit Tad3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 315

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 179 GCYETFLCRHLVL*AMQEDCSRRSLGILH 265
           G  + +LC+ L +    E C   S+G+LH
Sbjct: 234 GSKDRYLCKDLTVVMTHEPCVMCSMGLLH 262


>SPAC17D4.04 ||SPAC458.01|tRNA |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 4.0
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 235 VLLHRLQDQMPTQERFIASLPQNEQV 158
           +L  +L +Q+PT  R  AS+P   QV
Sbjct: 32  LLKQKLTEQLPTTFRITASIPHATQV 57


>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
           Rec8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 561

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 27  YRRGLPKWPNVPKRLELL 80
           YR+ LP  P++P R+E L
Sbjct: 427 YRKRLPHSPSMPSRVEFL 444


>SPBC1683.11c |||isocitrate lyase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 518

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 12/49 (24%), Positives = 19/49 (38%)
 Frame = +2

Query: 8   FSLSTFVSERFTKMAKRTKKVGITWQIWHTLRCLST*NGQKDGSNPTRK 154
           F  + F  E+   +     K+G+ WQ+     C        D SN  +K
Sbjct: 422 FKAAGFSEEQLRNLTSDMAKLGVCWQVQPYFTCQVLNKASVDYSNIWKK 470


>SPAC24B11.06c |sty1|spc1, phh1|MAP kinase Sty1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 349

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 193 RFIASLPQNEQVYFA 149
           RF+ SLPQ E+V FA
Sbjct: 248 RFVQSLPQKEKVPFA 262


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 51  PNVPKRLELLGKYGTRYGASLRKMVKKM 134
           PN  +RLE+L K   R+      M+KK+
Sbjct: 774 PNEEERLEVLQKLANRFHIENAAMLKKL 801


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,616
Number of Sequences: 5004
Number of extensions: 30213
Number of successful extensions: 85
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)