Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_C04
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0070 + 27479654-27479672,27479864-27479922,27480339-274803... 119 9e-28
01_06_0260 - 27959188-27959251,27959342-27959424,27960220-279603... 119 9e-28
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 1.6
07_01_0385 - 2871628-2872131 28 2.9
12_02_0648 + 21490202-21490296,21490547-21490634,21491216-214912... 27 3.8
11_04_0001 + 11984639-11984875,11984989-11985278,11985361-119857... 27 6.6
07_03_1237 + 25073010-25073513 27 6.6
11_03_0158 + 10911997-10912078,10912203-10912288,10913780-109138... 26 8.7
>05_07_0070 +
27479654-27479672,27479864-27479922,27480339-27480378,
27480477-27480565,27481065-27481147,27481219-27481282
Length = 117
Score = 119 bits (286), Expect = 9e-28
Identities = 51/83 (61%), Positives = 64/83 (77%)
Frame = +3
Query: 63 KRLELLGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 242
K+ ++GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C + A
Sbjct: 31 KKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKA 90
Query: 243 GGAWVFSTTAASSCRSAVRRLRE 311
GGA+ +T +A + RS +RRLRE
Sbjct: 91 GGAYTMNTASAVTVRSTIRRLRE 113
>01_06_0260 -
27959188-27959251,27959342-27959424,27960220-27960308,
27960388-27960427,27960938-27960981,27961240-27961288
Length = 122
Score = 119 bits (286), Expect = 9e-28
Identities = 51/83 (61%), Positives = 64/83 (77%)
Frame = +3
Query: 63 KRLELLGKYGTRYGASLRKMVKKMEVTQHAKYTCSFCGKDAMKRSCVGIWSCKRCKRTVA 242
K+ ++GKYGTRYGASLRK +KKMEV+QH+KY C FCGK A+KR VGIW CK C + A
Sbjct: 36 KKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKA 95
Query: 243 GGAWVFSTTAASSCRSAVRRLRE 311
GGA+ +T +A + RS +RRLRE
Sbjct: 96 GGAYTMNTASAVTVRSTIRRLRE 118
>07_03_0481 -
18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.7 bits (61), Expect = 1.6
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 171 CGKDAMKRSCVGIWSCKRCKRTVAGGAWVFSTTAASSCRSAVRRLR 308
C +KR+ G W C RC+ + + A +S R RR+R
Sbjct: 58 CLNPPLKRAPPGNWQCPRCRTKKVSLKLLDNADADTSKRERTRRMR 103
>07_01_0385 - 2871628-2872131
Length = 167
Score = 27.9 bits (59), Expect = 2.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +3
Query: 156 YTCSFCGKDAMKRSCVGIWSCKRCKRTVAGGAW 254
+ C FC K K +G K VAGG+W
Sbjct: 47 FPCLFCAKTFRKSQALGGHQNAHRKERVAGGSW 79
>12_02_0648 +
21490202-21490296,21490547-21490634,21491216-21491260,
21491355-21491387,21491480-21491557,21491647-21491690,
21491765-21491805,21492102-21492184,21492261-21492352,
21492468-21492537,21492838-21492876,21493670-21493687,
21494586-21494713,21495235-21495358,21495585-21495716,
21496092-21496223,21496582-21496665
Length = 441
Score = 27.5 bits (58), Expect = 3.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 135 EVTQHAKYTCSFCGKDAM 188
E+ +H KYTC C K A+
Sbjct: 194 EMVEHNKYTCPICSKTAL 211
>11_04_0001 +
11984639-11984875,11984989-11985278,11985361-11985719,
11985797-11985984,11986058-11986247,11986497-11986631,
11986694-11986947
Length = 550
Score = 26.6 bits (56), Expect = 6.6
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = +1
Query: 46 NGQTYQKGWNYLANMA-HVTVPLYVK 120
NG YQ+GW Y +++A +T LY K
Sbjct: 464 NGPKYQRGWEYGSSLALAMTKSLYPK 489
>07_03_1237 + 25073010-25073513
Length = 167
Score = 26.6 bits (56), Expect = 6.6
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +3
Query: 189 KRSCVGIWSCKRCKRTVAGGAWVFSTTAASSC 284
KR G+ C C RT++GG++ + ++C
Sbjct: 24 KRGAAGV--CNVCDRTISGGSYGYRCGGGAAC 53
>11_03_0158 +
10911997-10912078,10912203-10912288,10913780-10913857,
10913967-10914098,10914385-10914435,10914529-10914669,
10914754-10914876,10914989-10915066,10915448-10915541,
10915633-10915739,10915936-10916019,10916649-10916744,
10916835-10917023,10917705-10917780,10918507-10918610,
10918708-10918967,10920000-10920086,10920184-10920411,
10920752-10920826,10921264-10921346,10921552-10921661
Length = 787
Score = 26.2 bits (55), Expect = 8.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 12 LCQLLYRRGLPKWP 53
+C LY+R PKWP
Sbjct: 768 VCMSLYKRAYPKWP 781
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,622,122
Number of Sequences: 37544
Number of extensions: 196929
Number of successful extensions: 569
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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