Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_C03
(807 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomy... 102 7e-23
SPBC776.06c |||spindle pole body interacting protein |Schizosacc... 30 0.44
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 4.1
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz... 26 7.2
SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|ch... 26 7.2
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 7.2
SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 26 7.2
SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyce... 25 9.6
>SPCC126.12 |||NGG1p interacting factor 3 family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 102 bits (244), Expect = 7e-23
Identities = 70/178 (39%), Positives = 98/178 (55%), Gaps = 9/178 (5%)
Frame = +1
Query: 271 LEKVVTELEKFAPKELAESWDNTGLLVE-PYTPRQITKILLTNDLTEDVALEA-EILACE 444
L+KVV + + PK LA+SWDNTGLL+E P+ + +LLT DLTE VA EA
Sbjct: 10 LKKVVESI--YNPK-LADSWDNTGLLLEAPFPRTNASSVLLTIDLTEKVAEEAISNKLVS 66
Query: 445 MIISYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALYSPHTSWDSVRGGVNDWLASAFFV 624
I++YHP IF LK+I ++R + L + I +YSPHT+ D+ GVNDWLA
Sbjct: 67 SIVAYHPIIFRGLKAITMEDPQQRSLLKLAAEGIHVYSPHTAVDAAVDGVNDWLAQGIAG 126
Query: 625 AES--KPIL--QSNN---PDFGAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKG 777
+ K ++ Q N+ G GR+ L L + V + KELT L +V++ G
Sbjct: 127 GRNNIKSVVPTQQNSVMAEAEGYGRICELKIPTTLRELVQRAKELTGLQYVQVCAPNG 184
>SPBC776.06c |||spindle pole body interacting protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 598
Score = 29.9 bits (64), Expect = 0.44
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 598 DWLASAFFVAESKPILQSNNPDFGAGRLLHLSSGIPLSDAVNKIKE 735
D+L +A F + P+LQ P+ G LH + + L D V++ +E
Sbjct: 4 DYLLTAIFDPDRGPVLQYQCPENGEASDLHFLAELMLPDRVHERRE 49
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/71 (21%), Positives = 32/71 (45%)
Frame = +3
Query: 3 WPMALKPLTSIFLKNLKCHXXQIFXSXYFKKITFLKQFVFKHFTLLEWQTRNITNVLSVR 182
WP+ ++ S F + H ++ Y + + F+ HF + EW+ ++ +L +
Sbjct: 943 WPLIIRVSESAFKMHKDGHNVKVV-ERYLRTV-----FLRIHFLISEWRWEDVAQILFLI 996
Query: 183 QAHFKVKKFKE 215
F +KF +
Sbjct: 997 FDFFSHRKFND 1007
>SPAC3A11.05c |kms1||meiotic spindle pole body protein
Kms1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +1
Query: 637 PILQSNNPDFGAGRLLHLSSGIPLSDAVNKIKELTRLSHVRIAVAKGK--SMTHSV 798
P+++ + PDF G + L D ++K ++ R + + +GK +TH +
Sbjct: 178 PLVRKDKPDFSNGHHDLIKQITELQDMLDKARDQARKKSRTVDILEGKVNELTHQL 233
>SPCC70.03c |||proline dehydrogenase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 492
Score = 25.8 bits (54), Expect = 7.2
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +1
Query: 205 NSRNHLFTHFIKMSTEKFCAVSLEKVVTELEKFAPKELAESWD 333
NS H K T+K ++E ++ KFAP + A + D
Sbjct: 335 NSEPRFLIHDTKAETDKDFDSAVEAIIAAAAKFAPGDPASASD 377
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 7.2
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 7/43 (16%)
Frame = -1
Query: 381 FGYLSWCVRFH-------Q*TSVIPTLCQFFWSKFFKFCYYFF 274
F + S C RFH ++V+P C FF+ F F + F
Sbjct: 82 FFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLF 124
>SPACUNK4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 7.2
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = +1
Query: 376 TKILLTNDLTEDVALEAEILACEMIISYHPPIFAPLKSIVQRSWKERVVSYLLEKRIALY 555
TKI T++LTE + E+++ + S + AP K K+R V+ L + I+L+
Sbjct: 112 TKITDTSELTERERRKQELVSKKAEASRKMEVKAPAKES-----KKRKVNELSQDVISLH 166
Query: 556 SPHTS 570
SP S
Sbjct: 167 SPKES 171
>SPAC3G6.11 |||ATP-dependent DNA helicase Chl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +3
Query: 96 ITFLKQFVFKHFTLLEWQTRNITNVLSVRQAHF-KVKKFKESLVHTF 233
+ F F F + W+ ITN L+ ++ F + K F ++ + TF
Sbjct: 647 VVFFPSFAFLQQAVKVWEMNGITNRLNAKKPLFIESKDFGDNPLDTF 693
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,365
Number of Sequences: 5004
Number of extensions: 67132
Number of successful extensions: 172
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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