Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_C02
         (819 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   7e-15
SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)                  62   4e-10
SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.85 
SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  
SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.9  

>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1926

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 39/114 (34%), Positives = 70/114 (61%)
 Frame = +2

Query: 26  LNFSAGIGLFVGVTNRHILI*MALNPQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVET 205
           L+ +A + + V  T         ++  ++ + K FV+ YY++FD  + R NL  +Y    
Sbjct: 90  LDVAASVEVCVNSTQFFNSFIETMSQPFEQVAKQFVEYYYSVFD--SNRNNLAPLYQ-PG 146

Query: 206 SFMTFEGVQLQGAVKIMEKLNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLK 367
           S +TFEG Q+QG   I+ KL S+ FQ++  ++T+ D+QP+ +GG+++ V+G+LK
Sbjct: 147 SMLTFEGAQIQGTEAIVAKLVSMPFQQVLHVITSQDAQPLPNGGIIVFVMGQLK 200


>SB_27005| Best HMM Match : NTF2 (HMM E-Value=1.1e-33)
          Length = 662

 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 8/127 (6%)
 Frame = +2

Query: 101 PQYDAIGKGFVQQYYTLFDDPAQRANLVNMYNVETSFM---TFEGVQ---LQGAVKIMEK 262
           P    +G+ FV+QYYTL +   +   L   Y   + F+      G Q   + G   I EK
Sbjct: 6   PSPQCVGREFVRQYYTLLNQ--EPLKLHRFYTKHSWFLHGRAENGPQENPIMGQEAIYEK 63

Query: 263 LNSLTFQKITRIVTAVDSQPMFDGGVLINVLGRLKCDEDPPHLYMQTFVLKPLGD--SFY 436
           +  L F      +  VDS      GV++ V G L  +  P   +MQTFVL P  D   +Y
Sbjct: 64  IKDLNFVDCRTKILQVDSHSTLGSGVVVQVSGELSNNGQPMRKFMQTFVLAPGEDIRKYY 123

Query: 437 VQHDIFR 457
           V +DIFR
Sbjct: 124 VHNDIFR 130


>SB_7009| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 378 SSSHFNLPRTLIKTPPSNIGWESTAVTILVIF*KVKLFNFSIIL 247
           + + FN  R     PPSN+ W   AV + ++F  VK  N+ + L
Sbjct: 21  NDNFFNQNRKKFGAPPSNLVWALYAVFVGILFSVVKFLNYRLHL 64


>SB_26779| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 135 NNITHCSMIRLNGQILLICTMLKLHS*PLREYNCRVLL 248
           N + H +M+  +G   L CT+++ H       NCR LL
Sbjct: 315 NGVLHTAMLNHDGGFELQCTLVRTHPNSSNIVNCRFLL 352


>SB_36566| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1653

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 16/60 (26%), Positives = 27/60 (45%)
 Frame = -3

Query: 193 VHINKICPLSRIIEQCVILLHKTFTDCIVLRIERHLD*DVSICHTNKKPNSSRKIQDVTN 14
           + ++ + PL + +      LH    DC+    ++H D     C  N  PN +RK+ D  N
Sbjct: 139 IDVSGVMPLQQTMSPSEDCLH----DCVDESSDKHTD-----CQRNNVPNRTRKLSDTEN 189


>SB_28307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 761

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 206 KFQHCTY*QDLPVEPDHRTMCNIVAQNL 123
           KF  C Y +++ VE DH+ +  IV + L
Sbjct: 418 KFDQCVYGREVTVESDHKPLAAIVTKPL 445


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,051,888
Number of Sequences: 59808
Number of extensions: 548863
Number of successful extensions: 1031
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2287608719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)