Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_C01
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa...   108   1e-24
SPBC215.14c |vps20||vacuolar sorting protein Vps20|Schizosacchar...    36   0.007
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    31   0.27 
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    28   1.9  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.9  

>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
           Vps32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 222

 Score =  108 bits (259), Expect = 1e-24
 Identities = 67/203 (33%), Positives = 98/203 (48%), Gaps = 1/203 (0%)
 Frame = +2

Query: 149 TTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQLT 328
           TT + I + +E   L  KK+E LE++I  + + ARK+ T N             +E +L 
Sbjct: 16  TTKDTIVRFQEMLALYDKKEEVLERQIAEQTEIARKNATTNKRLALTALKRKKMHENELV 75

Query: 329 QIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHD 508
           +I+G+   IE Q  +++ AN N + L  MR+ A AMK   + +D DKV  IMD I +Q  
Sbjct: 76  KIEGSRNNIEQQLFSIQNANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIMDKIRDQQT 135

Query: 509 ISREITEAISNNVAFPNDIXXXXXXXXXXXXXXXXXXXXMLGINVPTDTLPDVPA-SELV 685
           IS EI+  IS  V    +I                    MLG   P    P VPA    V
Sbjct: 136 ISEEISTMISTPVGLNAEIDEDELANELDELQQMELDSKMLGAEKPPVHTPAVPAVPSQV 195

Query: 686 HDKPKPSKSKQTEDDDELAXLQS 754
            D P  SK ++ ++++EL  LQ+
Sbjct: 196 KDLPSISKPQELDEEEELRKLQA 218


>SPBC215.14c |vps20||vacuolar sorting protein
           Vps20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 226

 Score = 35.9 bits (79), Expect = 0.007
 Identities = 28/131 (21%), Positives = 54/131 (41%), Gaps = 1/131 (0%)
 Frame = +2

Query: 161 AIQKLRETEELLIKKQEFLEKKIDLEVQTARK-HGTKNXXXXXXXXXXXXXYEKQLTQID 337
           +I  ++E  + L++  + LEK   LE+  ARK     +             Y   +TQ  
Sbjct: 14  SILSIKEQRDKLLRYSKRLEKIEQLEIDIARKCLRDSDKRGALRALKAKKLYSGLITQTY 73

Query: 338 GTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHDISR 517
           G L  IE     +E       V+  ++E  N ++    D+ +++V  I +D  E      
Sbjct: 74  GQLGNIEQLLSTIEFTLIQKDVMFGLQEGTNLIRQLQADMPLERVGRICNDRDEAMSYVD 133

Query: 518 EITEAISNNVA 550
           E+ + +   ++
Sbjct: 134 EVNDMLQGRMS 144


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 20/82 (24%), Positives = 39/82 (47%)
 Frame = +2

Query: 170 KLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQLTQIDGTLT 349
           KL E+ + LIKKQE ++  ++  +QT ++   K+               + +  + G   
Sbjct: 669 KLEESNKSLIKKQEDVD-SLEKNIQTLKEDLRKSEEALRFSKLEAKNLREVIDNLKGKHE 727

Query: 350 QIEAQREALEGANTNAQVLNTM 415
            +EAQR  L  + ++A+  N +
Sbjct: 728 TLEAQRNDLHSSLSDAKNTNAI 749


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/34 (35%), Positives = 15/34 (44%)
 Frame = +1

Query: 181  NRRIADQEARVFGKEDRFRSTDSQETWH*EQKSC 282
            N +      + F  E RFRSTD    WH  +  C
Sbjct: 918  NNQDESNGTKTFAAEIRFRSTDGHYRWHLVKSVC 951


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 650 DTLPDVPASELVHDKPKPSKSKQTEDDDELAXLQS 754
           DT+PD+P    +  +PKPS S +       A L++
Sbjct: 458 DTVPDLPPLGSLSSRPKPSSSSRRRSQSLSAMLKT 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,083,038
Number of Sequences: 5004
Number of extensions: 59404
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)