Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_C01
(833 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29488-7|AAA68771.1| 221|Caenorhabditis elegans Hypothetical pr... 169 3e-42
U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical p... 152 3e-37
U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical pr... 118 4e-27
AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical ... 49 4e-06
Z68338-2|CAA92759.1| 411|Caenorhabditis elegans Hypothetical pr... 44 2e-04
Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical pr... 28 7.2
EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein. 28 7.2
AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor w... 28 7.2
Z81477-3|CAB03929.2| 316|Caenorhabditis elegans Hypothetical pr... 28 9.5
AL022288-3|CAA18364.1| 173|Caenorhabditis elegans Hypothetical ... 28 9.5
>U29488-7|AAA68771.1| 221|Caenorhabditis elegans Hypothetical
protein C56C10.3 protein.
Length = 221
Score = 169 bits (410), Expect = 3e-42
Identities = 92/204 (45%), Positives = 118/204 (57%)
Frame = +2
Query: 149 TTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQLT 328
T E+IQKLRETEE+L KKQEFLEKK+ E Q A K+GTKN +EKQL
Sbjct: 18 TPQESIQKLRETEEMLEKKQEFLEKKVIDEKQNAVKYGTKNKRMALQCLNRKRNFEKQLA 77
Query: 329 QIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQHD 508
IDG L+ I QREALE A+TNA+VLN M A+ A+K AH ++D+D+VHD+M+DIAEQ +
Sbjct: 78 HIDGVLSTIGYQREALENASTNAEVLNVMGTASKALKAAHNNMDIDQVHDLMEDIAEQQE 137
Query: 509 ISREITEAISNNVAFPNDIXXXXXXXXXXXXXXXXXXXXMLGINVPTDTLPDVPASELVH 688
++ EI EAISN V F + +L P TLPD P +
Sbjct: 138 VANEIAEAISNPVGFSTAVDDDDLMRELEALEQEELDKELLDARAPPVTLPDTP--NIAL 195
Query: 689 DKPKPSKSKQTEDDDELAXLQSWA 760
S+ + E D +L L+SWA
Sbjct: 196 PAVPASRPRAKEADKDLEDLESWA 219
>U64857-10|AAC25860.1| 265|Caenorhabditis elegans Hypothetical
protein C37C3.3 protein.
Length = 265
Score = 152 bits (368), Expect = 3e-37
Identities = 88/205 (42%), Positives = 116/205 (56%), Gaps = 1/205 (0%)
Frame = +2
Query: 149 TTHEAIQKLRETEELLIKKQEFLEKKID-LEVQTARKHGTKNXXXXXXXXXXXXXYEKQL 325
T E+IQKLRETE++L KKQEFLEKKID + Q A K+GTKN +EKQL
Sbjct: 66 TPQESIQKLRETEDILEKKQEFLEKKIDDVRKQNAVKYGTKNKRMALQCLSRKKAFEKQL 125
Query: 326 TQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQH 505
IDG L +E QRE LE A+TNA+VL M+ A++A+K H ++D D+V D+MD+I EQ
Sbjct: 126 IHIDGVLATLEHQRETLENASTNAEVLTVMKLASDALKAVHNNMDSDQVRDMMDNIDEQR 185
Query: 506 DISREITEAISNNVAFPNDIXXXXXXXXXXXXXXXXXXXXMLGINVPTDTLPDVPASELV 685
++++EI +AIS N F N I +L P TLPD P L
Sbjct: 186 EVAKEIADAIS-NPGFNNAIDEADLLRELVDLEQEALDKDLLDARAPPVTLPDTPNIALP 244
Query: 686 HDKPKPSKSKQTEDDDELAXLQSWA 760
+P+ E D +L L+SWA
Sbjct: 245 ASRPRAK-----EADKDLEDLESWA 264
>U23510-6|AAC46784.2| 236|Caenorhabditis elegans Hypothetical
protein R12C12.5 protein.
Length = 236
Score = 118 bits (285), Expect = 4e-27
Identities = 66/179 (36%), Positives = 98/179 (54%)
Frame = +2
Query: 146 PTTHEAIQKLRETEELLIKKQEFLEKKIDLEVQTARKHGTKNXXXXXXXXXXXXXYEKQL 325
PT EAI LR+ EELLIKKQE+ E +I+ EV++A+K+ N YE++L
Sbjct: 34 PTADEAIGNLRDAEELLIKKQEYFELRIEQEVESAKKYMKTNKKMALAALRKKKHYEQEL 93
Query: 326 TQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDDIAEQH 505
++IDG LT++EAQR ALE + +V++ + + +K H +D+DKVHD+MD+IA+
Sbjct: 94 SRIDGVLTKLEAQRTALENVGMHNEVIDVLGKTTETLKKEHAKMDIDKVHDLMDEIADGL 153
Query: 506 DISREITEAISNNVAFPNDIXXXXXXXXXXXXXXXXXXXXMLGINVPTDTLPDVPASEL 682
+S E+ EAIS + D +VP TLP+ P+ EL
Sbjct: 154 AMSEELNEAISAPIGDVADEDELMQELQELQDNVADLSTTTKLPDVPA-TLPEAPSGEL 211
>AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical
protein F41E6.9 protein.
Length = 217
Score = 49.2 bits (112), Expect = 4e-06
Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 5/143 (3%)
Frame = +2
Query: 146 PTTHEAIQKLRETEELLIKKQEFLEK---KIDLEVQTARKHGTKNXXXXXXXXXXXXX-- 310
P + AI + + + KK + L++ K+ ++ R+ +KN
Sbjct: 14 PDLNNAISNVESRSDSIDKKIQKLDQDLMKLRDQMSKMREGPSKNLIKQKALRVLKQKRM 73
Query: 311 YEKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMKLAHKDIDVDKVHDIMDD 490
YE Q Q+D ++ A++G N + M++ M+ +K +++D++ D+ D
Sbjct: 74 YENQKGQLDQQAFNMDQSNFAIQGMKDNQVTVAAMKDGLKTMQKEYKKMNIDQIEDLQDQ 133
Query: 491 IAEQHDISREITEAISNNVAFPN 559
+ + D++ EI EA+S P+
Sbjct: 134 MEDMLDMNNEIQEAMSRQYDTPD 156
>Z68338-2|CAA92759.1| 411|Caenorhabditis elegans Hypothetical
protein T24B8.2 protein.
Length = 411
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Frame = +2
Query: 314 EKQLTQIDGTLTQIEAQREALEGANTNAQVLNTMREAANAMK--LAHKDIDVDKVHDIMD 487
EK + D ++ + A N VL + A K LA + + DK+H+ MD
Sbjct: 269 EKDIADKDVQYQKLLTMLHQISSAKNNKDVLQAYKSGTAAFKATLARQGLSPDKIHETMD 328
Query: 488 DIAEQHDISREITEAISN 541
D+ D +EI EAIS+
Sbjct: 329 DVVNSMDEYKEIEEAISS 346
>Z48809-1|CAA88745.1| 1299|Caenorhabditis elegans Hypothetical
protein T01E8.3 protein.
Length = 1299
Score = 28.3 bits (60), Expect = 7.2
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 131 FCHRIFSRENSFWKP 87
FC +FSRENS W P
Sbjct: 280 FCDFLFSRENSLWDP 294
>EF472000-1|ABQ96385.1| 1142|Caenorhabditis elegans SMG-3 protein.
Length = 1142
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 674 SELVHDKPKPSKSKQTEDDDE 736
+E V D+P S SKQ DDDE
Sbjct: 1012 AETVKDEPAASSSKQDNDDDE 1032
>AC084197-22|AAK68590.2| 1142|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 3 protein.
Length = 1142
Score = 28.3 bits (60), Expect = 7.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +2
Query: 674 SELVHDKPKPSKSKQTEDDDE 736
+E V D+P S SKQ DDDE
Sbjct: 1012 AETVKDEPAASSSKQDNDDDE 1032
>Z81477-3|CAB03929.2| 316|Caenorhabditis elegans Hypothetical
protein C27C7.3 protein.
Length = 316
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 541 VTDRLGDLTRDIVLFSNIIHDIVYFVH 461
V R+GD+T I+ SN+ +D++ H
Sbjct: 284 VATRIGDITLQIITVSNLYNDMIRLYH 310
>AL022288-3|CAA18364.1| 173|Caenorhabditis elegans Hypothetical
protein ZK1025.6 protein.
Length = 173
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -2
Query: 541 VTDRLGDLTRDIVLFSNIIHDIVYFVH 461
V R+GD+T I+ SN+ +D++ H
Sbjct: 141 VATRIGDITLQIITVSNLYNDMIRLYH 167
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,283,440
Number of Sequences: 27780
Number of extensions: 347124
Number of successful extensions: 1216
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1213
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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