Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_C01
         (833 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    28   0.092
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.16 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   2.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.1  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.1  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 28.3 bits (60), Expect = 0.092
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 626 MLGINVPTDTLPDVPASELVHDKPKPS 706
           +LG NVP + L  +P   LV+ +P PS
Sbjct: 20  LLGWNVPAEELIHIPEHWLVYPEPNPS 46


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 27.5 bits (58), Expect = 0.16
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 226 DRFRSTDSQETWH*EQKSCHCSSQAE-EEIREAT 324
           DR++  +S E ++ E K  H   Q E EE  EAT
Sbjct: 177 DRYKEEESNENYNWEHKETHIDWQPEDEECTEAT 210


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
 Frame = +3

Query: 45  LCYESADLGLEKNKWFPK*V--FSGKYSVAKKKRRGPLRMKLSKNSVKPKNC 194
           + Y   D+G+  + W    V  F G   +  K RRG L   + +  +   NC
Sbjct: 196 VAYWREDIGINLHHWHWHLVYPFEGDIRIVNKDRRGELFYYMHQQIMARYNC 247



 Score = 23.4 bits (48), Expect = 2.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 401 LGHWYWHLLALPF 363
           L HW+WHL+  PF
Sbjct: 207 LHHWHWHLV-YPF 218


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 257 VSWLSVLLNRSSFPKTLA 204
           +SW+S  LNR++ P  +A
Sbjct: 237 ISWVSFWLNRNATPARVA 254


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 257 VSWLSVLLNRSSFPKTLA 204
           +SW+S  LNR++ P  +A
Sbjct: 237 ISWVSFWLNRNATPARVA 254


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -3

Query: 144 PFSSFLPPNIF 112
           PF  F+PPN++
Sbjct: 375 PFPRFIPPNVY 385


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 257 VSWLSVLLNRSSFPKTLA 204
           +SW+S  LNR++ P  +A
Sbjct: 176 ISWVSFWLNRNATPARVA 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,815
Number of Sequences: 438
Number of extensions: 4320
Number of successful extensions: 93
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)