Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_B24
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 28 0.77
SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual 28 1.0
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 27 2.3
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 27 2.3
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar... 26 3.1
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 25 5.4
SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase |Schizo... 25 7.2
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 9.5
SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces pom... 25 9.5
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 25 9.5
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 28.3 bits (60), Expect = 0.77
Identities = 19/58 (32%), Positives = 26/58 (44%)
Frame = +2
Query: 215 PYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWYPRA 388
P HS LP+E S+DNT T + NEM P +N ++ +H P A
Sbjct: 103 PSFHSFGLPQEDSQDNTQTYSTPYTTM-NPSNEMHPYPPATFENNYSVLPDHSSQPNA 159
>SPBC21C3.10c |||5-amino-6-|Schizosaccharomyces pombe|chr 2|||Manual
Length = 268
Score = 27.9 bits (59), Expect = 1.0
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +2
Query: 335 KQLSNLTLTTEHRWYPRARD 394
K L+NL LTT WYP D
Sbjct: 225 KNLNNLNLTTNSHWYPCGPD 244
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 26.6 bits (56), Expect = 2.3
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 98 YLTRKIALIPXVALSRFYNKIVITDDGSTIVALHQDYDFPYEHSRALPEETS 253
YL K +P V + N+IV DG+ I+AL+ +H R + + S
Sbjct: 197 YLKAKELHLPLVHIFNVENEIVENCDGNHILALNFSLQTLLQHGRIVRKSNS 248
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 26.6 bits (56), Expect = 2.3
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = -1
Query: 472 KLYYIYNKKLEGLQIGSIHFSFLGLFISSSRVP-TMFSS 359
KLY + ++ L L+ S F L LF+SS+ +P T+ +S
Sbjct: 307 KLYALLDRNLLYLKTRSRFFRLLDLFLSSTHLPATLIAS 345
>SPAC27F1.04c |nuf2||spindle pole body protein
Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 441
Score = 26.2 bits (55), Expect = 3.1
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +2
Query: 260 NTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWYPRARDKKAKKTEMN 421
+T ++ D E+ + E + E KQLSN EH + R + +A K M+
Sbjct: 313 STNQELCDQIEINKKKLEFRKEQLLKQLSNAQEKLEHEQHSRNQKLEAAKQRMD 366
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 356 LTTEHRWYPRARDKKAKKTEMN 421
L + RW RARD+K +K N
Sbjct: 23 LKSSRRWTDRARDRKRQKRNSN 44
>SPBC887.13c |||3-oxoacyl-[acyl-carrier-protein]-synthase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 7.2
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 334 SCKFRFHFIEDSFNFI*IGH 275
+C H I D+FNFI +GH
Sbjct: 169 ACAAGCHAIGDAFNFIKLGH 188
>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 536
Score = 24.6 bits (51), Expect = 9.5
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 203 DYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRV 304
DY +EH + E + KD + K+ +E+ RV
Sbjct: 234 DYHNTFEHICKILENSVKDKFIEKLVSKEELTRV 267
>SPCC1919.11 |mug137||BAR adaptor protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 420
Score = 24.6 bits (51), Expect = 9.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 91 NVLFNSQNSINPKXGIK 141
N +FNSQNS+ P+ I+
Sbjct: 217 NTIFNSQNSLTPQKKIQ 233
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 24.6 bits (51), Expect = 9.5
Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +2
Query: 269 LKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEH---RWYPRARDKKAKKTEMN 421
L+M DL ++ R E +RK L+ H RWYP+ ++K+ N
Sbjct: 92 LQMEDLQQLSR-------ETSRKSLNRRVSFASHARVRWYPKDHQSDSEKSTSN 138
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,633,568
Number of Sequences: 5004
Number of extensions: 27406
Number of successful extensions: 89
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -