Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_B24
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 30 1.4
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250... 29 1.8
02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,162... 29 3.1
04_04_0158 - 23187070-23187264,23187347-23187477,23187550-231877... 28 4.1
11_03_0127 - 10408628-10409106,10409188-10409821 27 9.6
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804... 27 9.6
03_01_0381 - 2960533-2960805 27 9.6
02_05_0497 - 29502012-29502101,29502128-29502197,29502302-295024... 27 9.6
>02_05_0702 -
31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 29.9 bits (64), Expect = 1.4
Identities = 21/72 (29%), Positives = 39/72 (54%)
Frame = +2
Query: 158 IVITDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFARK 337
+++ +GS V+ + Y+ E +++L EE +K T L + K V ++ EFAR+
Sbjct: 712 LMVLFEGSQEVS-RKAYEQVSERAKSLDEELTKLRTELLSLRSERDKAV---LEAEFARE 767
Query: 338 QLSNLTLTTEHR 373
+L+ T EH+
Sbjct: 768 RLNGFTAELEHQ 779
>09_01_0175 -
2509014-2509064,2509389-2509490,2509603-2509729,
2509852-2511564,2512335-2512424,2512533-2512801,
2513118-2513687,2513703-2514065
Length = 1094
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = +2
Query: 227 SRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTE 367
S+ E+ D TVLK D DE+ FN+M + R+ S L TE
Sbjct: 598 SKGSNEDIFIDPTVLKHMDRDELVAHFNKMMNQMKRQHDSTLQEKTE 644
>02_01_0246 + 1617326-1617367,1618903-1624419,1625040-1625498,
1625603-1625887,1626016-1626030,1626339-1626419,
1626909-1627322,1627423-1627719,1627801-1629864
Length = 3057
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Frame = +2
Query: 164 ITDDGSTIVALH---QDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPE 325
I +DG+ + H +D + P + S A+ EET+++ +L D+V+ E++PE
Sbjct: 1115 IQNDGAELTKEHDGVKDEEIPDQSSGAIVEETAQEANLLASEPTDDVQ--VKELEPE 1169
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 3/87 (3%)
Frame = +2
Query: 164 ITDDGSTIVALHQDY---DFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFAR 334
I +DG+ + H + P + S A+ EET+++ ++ +D+V+ +++PE
Sbjct: 945 IQNDGAELTEQHDSVKAEELPNQSSGAIVEETAQEADLVAGEPIDDVQE--KDLEPEEIS 1002
Query: 335 KQLSNLTLTTEHRWYPRARDKKAKKTE 415
+ T H+ + D + E
Sbjct: 1003 NTVDGETGEASHQTHAAVEDNWTGEVE 1029
>04_04_0158 -
23187070-23187264,23187347-23187477,23187550-23187763,
23187834-23187932,23188034-23188156,23188247-23188366,
23188447-23188506,23188592-23188884,23189554-23189707,
23189813-23190130,23190668-23190798,23191001-23191586,
23192125-23192739
Length = 1012
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 137 LSRFYNKIVITDDGSTIVALH-QDYDFPYEHSRALPEETSKDNTVLKMTDLD 289
L R +VI GSTI+ DY +PY H R + + + + D D
Sbjct: 204 LERKTGGLVIWRSGSTIILYRGTDYKYPYFHDREMKNDMDESSEHTSSDDED 255
>11_03_0127 - 10408628-10409106,10409188-10409821
Length = 370
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Frame = +2
Query: 182 TIVALHQDYDFPYEHSRALPEETSKD---NTVLKMTDLDEVKRVFNEMKPEFARKQLSNL 352
T V DY FP H LPE +D L+++ + + V E R++ SN
Sbjct: 45 TRVPSESDYRFPTRHRHDLPETAMQDAAREAFLRLSSIHRAELVSTEFAHHLFREE-SNS 103
Query: 353 TLTTE 367
T +
Sbjct: 104 VCTVQ 108
>03_05_1111 -
30479793-30479823,30479887-30479978,30480261-30480410,
30482229-30482354,30482563-30482628,30483134-30483214,
30483310-30483422,30483553-30483721,30484253-30484330,
30485489-30485752,30486239-30486379,30486548-30486759,
30486819-30486940,30487281-30487398,30487925-30487997
Length = 611
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 356 LTTEHRWYPRARDKK 400
LT H WYP AR+KK
Sbjct: 63 LTHPHIWYPNAREKK 77
>03_01_0381 - 2960533-2960805
Length = 90
Score = 27.1 bits (57), Expect = 9.6
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = +2
Query: 296 KRVFNEMKPEFARKQLSNLTLTTEHRWYPRARDKKAK 406
K + E + F + ++N+T T E +W + R +K +
Sbjct: 27 KELEKEFERAFEQSDIANVTKTLEEKWAEQVRKRKLR 63
>02_05_0497 -
29502012-29502101,29502128-29502197,29502302-29502411,
29502530-29502641,29503341-29503498,29503592-29503807,
29504127-29504354,29504722-29504801,29504886-29505056,
29505179-29505281,29505369-29505551,29506313-29506813,
29506935-29507100,29507517-29507566,29508047-29508127,
29508291-29508398,29508874-29508939,29509053-29509109,
29509442-29509507,29509917-29510006,29510850-29510975,
29511681-29511717,29512192-29512250,29512562-29512615,
29513294-29513428,29513542-29513612,29513720-29513957
Length = 1141
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 167 TDDGSTIVALHQDYDFPYEHSRA-LPEETSKDNTVLKMTDLDEVK 298
TDD + H D E R + EE + + T+ DLDE+K
Sbjct: 553 TDDEINVDGSHSSEDSLVEKKRRRVDEEIAAEGTISSSGDLDEIK 597
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,275,808
Number of Sequences: 37544
Number of extensions: 138757
Number of successful extensions: 333
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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