Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_B24
(541 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533495-1|CAG38526.1| 142|Homo sapiens MRPL42 protein. 58 3e-08
BC040240-1|AAH40240.1| 142|Homo sapiens mitochondrial ribosomal... 58 3e-08
AK000285-1|BAA91054.1| 142|Homo sapiens protein ( Homo sapiens ... 58 3e-08
AF135160-1|AAF43784.1| 142|Homo sapiens unknown protein. 58 3e-08
AB051626-1|BAB54953.1| 51|Homo sapiens mitochondrial ribosomal... 31 2.0
AL356115-1|CAI40902.1| 588|Homo sapiens KIAA1128 protein. 30 4.5
AF241785-1|AAG44473.1| 566|Homo sapiens NPD012 protein. 30 4.5
AB032954-1|BAA86442.1| 588|Homo sapiens KIAA1128 protein protein. 30 4.5
AK098126-1|BAC05240.1| 133|Homo sapiens protein ( Homo sapiens ... 29 7.9
>CR533495-1|CAG38526.1| 142|Homo sapiens MRPL42 protein.
Length = 142
Score = 57.6 bits (133), Expect = 3e-08
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Frame = +2
Query: 155 KIVITDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFAR 334
++ +T DG TIV H D PYEH++ +P N + T D+V + E K E
Sbjct: 48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNN--EETH-DQVLKTRLEEKVEHLE 104
Query: 335 -----KQLSNLTLTTEHRWYPRARDKKAKKTEMNRP 427
+QLS + TT+HRWYP R + +K +N P
Sbjct: 105 EGPMIEQLSKMFFTTKHRWYPHGRYHRCRK-NLNPP 139
>BC040240-1|AAH40240.1| 142|Homo sapiens mitochondrial ribosomal
protein L42 protein.
Length = 142
Score = 57.6 bits (133), Expect = 3e-08
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Frame = +2
Query: 155 KIVITDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFAR 334
++ +T DG TIV H D PYEH++ +P N + T D+V + E K E
Sbjct: 48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNN--EETH-DQVLKTRLEEKVEHLE 104
Query: 335 -----KQLSNLTLTTEHRWYPRARDKKAKKTEMNRP 427
+QLS + TT+HRWYP R + +K +N P
Sbjct: 105 EGPMIEQLSKMFFTTKHRWYPHGRYHRCRK-NLNPP 139
>AK000285-1|BAA91054.1| 142|Homo sapiens protein ( Homo sapiens
cDNA FLJ20278 fis, clone HEP03158. ).
Length = 142
Score = 57.6 bits (133), Expect = 3e-08
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Frame = +2
Query: 155 KIVITDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFAR 334
++ +T DG TIV H D PYEH++ +P N + T D+V + E K E
Sbjct: 48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNN--EETH-DQVLKTRLEEKVEHLE 104
Query: 335 -----KQLSNLTLTTEHRWYPRARDKKAKKTEMNRP 427
+QLS + TT+HRWYP R + +K +N P
Sbjct: 105 EGPMIEQLSKMFFTTKHRWYPHGRYHRCRK-NLNPP 139
>AF135160-1|AAF43784.1| 142|Homo sapiens unknown protein.
Length = 142
Score = 57.6 bits (133), Expect = 3e-08
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Frame = +2
Query: 155 KIVITDDGSTIVALHQDYDFPYEHSRALPEETSKDNTVLKMTDLDEVKRVFNEMKPEFAR 334
++ +T DG TIV H D PYEH++ +P N + T D+V + E K E
Sbjct: 48 ELALTSDGRTIVCYHPSVDIPYEHTKPIPRPDPVHNN--EETH-DQVLKTRLEEKVEHLE 104
Query: 335 -----KQLSNLTLTTEHRWYPRARDKKAKKTEMNRP 427
+QLS + TT+HRWYP R + +K +N P
Sbjct: 105 EGPMIEQLSKMFFTTKHRWYPHGRYHRCRK-NLNPP 139
>AB051626-1|BAB54953.1| 51|Homo sapiens mitochondrial ribosomal
protein L42 protein.
Length = 51
Score = 31.5 bits (68), Expect = 2.0
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = +2
Query: 335 KQLSNLTLTTEHRWYPRAR 391
+QLS + TT+HRWYP R
Sbjct: 33 EQLSKMFFTTKHRWYPHGR 51
>AL356115-1|CAI40902.1| 588|Homo sapiens KIAA1128 protein.
Length = 588
Score = 30.3 bits (65), Expect = 4.5
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 239 PEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWYPRARDKK 400
PE D L+E+K++ +E+K + + QL L L T+H + + +++K
Sbjct: 460 PEPEDGDKVYKNEDLLNEIKQLKDEIKKKDEKIQLLELQLATQHICHQKCKEEK 513
>AF241785-1|AAG44473.1| 566|Homo sapiens NPD012 protein.
Length = 566
Score = 30.3 bits (65), Expect = 4.5
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 239 PEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWYPRARDKK 400
PE D L+E+K++ +E+K + + QL L L T+H + + +++K
Sbjct: 438 PEPEDGDKVYKNEDLLNEIKQLKDEIKKKDEKIQLLELQLATQHICHQKCKEEK 491
>AB032954-1|BAA86442.1| 588|Homo sapiens KIAA1128 protein protein.
Length = 588
Score = 30.3 bits (65), Expect = 4.5
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +2
Query: 239 PEETSKDNTVLKMTDLDEVKRVFNEMKPEFARKQLSNLTLTTEHRWYPRARDKK 400
PE D L+E+K++ +E+K + + QL L L T+H + + +++K
Sbjct: 460 PEPEDGDKVYKNEDLLNEIKQLKDEIKKKDEKIQLLELQLATQHICHQKCKEEK 513
>AK098126-1|BAC05240.1| 133|Homo sapiens protein ( Homo sapiens
cDNA FLJ40807 fis, clone TRACH2009268. ).
Length = 133
Score = 29.5 bits (63), Expect = 7.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 155 KIVITDDGSTIVALHQDYDFPYEHSR 232
++ + DG TIV H D YEH++
Sbjct: 90 ELAVISDGRTIVCYHHSVDISYEHTK 115
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,543,488
Number of Sequences: 237096
Number of extensions: 848080
Number of successful extensions: 1333
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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