Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_B22
(750 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174; Eukary... 374 e-102
UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3; ... 238 9e-62
UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4... 230 2e-59
UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1; Tr... 212 7e-54
UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3; Olig... 204 2e-51
UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole geno... 195 1e-48
UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1; Encephal... 190 2e-47
UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genom... 167 2e-40
UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1; Ostreo... 145 9e-34
UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5; Euryarc... 138 1e-31
UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lambl... 136 4e-31
UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4; Archaea... 120 3e-26
UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8; Euryarc... 120 5e-26
UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3; Methano... 116 6e-25
UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2; Thermof... 114 3e-24
UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5; Halobac... 113 3e-24
UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5; Methano... 113 4e-24
UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1; ... 112 8e-24
UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1; Methano... 109 7e-23
UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1; Archaeo... 106 7e-22
UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zin... 103 4e-21
UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 101 3e-20
UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3; Sulfolo... 99 6e-20
UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1; Staphyl... 95 1e-18
UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6; Pyrobac... 95 1e-18
UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2; Thermop... 94 4e-18
UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1; ... 91 2e-17
UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivi... 89 1e-16
UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S riboso... 88 2e-16
UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4; Thermop... 87 6e-16
UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmenta... 84 4e-15
UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genom... 69 9e-11
UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1; ... 66 7e-10
UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole gen... 66 9e-10
UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella... 66 1e-09
UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2; Nanoarc... 66 1e-09
UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2; Deinococ... 64 5e-09
UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19; Bactero... 58 3e-07
UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9; Mycoplas... 56 1e-06
UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197; Bacter... 55 2e-06
UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobact... 54 3e-06
UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1; ... 53 7e-06
UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellula... 50 5e-05
UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponem... 50 8e-05
UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3; Planctom... 48 2e-04
UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5; Thermoto... 48 2e-04
UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10; Chlorob... 48 2e-04
UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces cap... 46 8e-04
UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n... 45 0.002
UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27; Bacteri... 44 0.003
UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39; Bacteri... 44 0.004
UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18; Bacteri... 44 0.004
UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3; n... 44 0.005
UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1; ... 43 0.007
UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3; Entomopl... 43 0.007
UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94; Bacteri... 43 0.009
UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplas... 42 0.012
UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococc... 42 0.012
UniRef50_Q2GED3 Cluster: 30S ribosomal protein S3; n=1; Neoricke... 41 0.028
UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4; Leptospi... 39 0.15
UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellul... 38 0.20
UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n... 38 0.20
UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592, ... 36 0.81
UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.81
UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163; Firmic... 36 0.81
UniRef50_A6GSD9 Cluster: TonB, C-terminal; n=1; Limnobacter sp. ... 36 1.1
UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1; ... 35 2.5
UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas palustris|... 29 2.9
UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;... 34 3.3
UniRef50_Q5U794 Cluster: Signal recognition particle GTPase; n=1... 34 4.3
UniRef50_Q8EUC1 Cluster: 30S ribosomal protein S3; n=7; Mycoplas... 34 4.3
UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus carot... 33 7.5
UniRef50_A0DWV1 Cluster: Chromosome undetermined scaffold_67, wh... 33 7.5
UniRef50_O84054 Cluster: Putative uncharacterized protein; n=3; ... 33 9.9
UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin... 33 9.9
UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8; Euteleos... 33 9.9
UniRef50_P36021 Cluster: Monocarboxylate transporter 8; n=24; Eu... 33 9.9
>UniRef50_P23396 Cluster: 40S ribosomal protein S3; n=174;
Eukaryota|Rep: 40S ribosomal protein S3 - Homo sapiens
(Human)
Length = 243
Score = 374 bits (921), Expect = e-102
Identities = 181/215 (84%), Positives = 192/215 (89%)
Frame = +1
Query: 100 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 279
AELNEFLTRELAEDGYSGVEVRVTP R+EIII+ATRTQ+VLGEKGRRIRELT+VVQKRF
Sbjct: 19 AELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFG 78
Query: 280 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 459
PE SVELYAEKVATRGLCAIAQAESLRYKL+GGLAVRRACYGVLRFIMESGA+GCEVVV
Sbjct: 79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVV 138
Query: 460 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKN 639
SGKLRGQRAKSMKFVDGLMIHSGDP N YV+TA RHVLLRQGVLGIKVKIMLPWD GK
Sbjct: 139 SGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKI 198
Query: 640 GPKKPQPDHILVTEPKDEPVPLEPTXEVRSLAPAP 744
GPKKP PDH+ + EPKDE +P P E + P P
Sbjct: 199 GPKKPLPDHVSIVEPKDEILPTTPISEQKGGKPEP 233
>UniRef50_Q59N00 Cluster: Likely cytosolic ribosomal protein S3;
n=4; Saccharomycetales|Rep: Likely cytosolic ribosomal
protein S3 - Candida albicans (Yeast)
Length = 251
Score = 238 bits (583), Expect = 9e-62
Identities = 117/198 (59%), Positives = 146/198 (73%)
Frame = +1
Query: 100 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 279
AELNEF TRELAE GY+GVEVR TP + E+I+ A+ TQ VLGE+GRRI ELTS++ KRF
Sbjct: 20 AELNEFFTRELAEQGYAGVEVRKTPSKLEVIVKASNTQGVLGEQGRRIHELTSLIVKRFK 79
Query: 280 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 459
+ + + +YAE+V RGL A QAE+L+ KL+ GL +RRA YGVLRF M +GA+G EVV+
Sbjct: 80 LSPEGIAIYAERVEERGLSAAVQAEALKAKLLSGLPIRRAAYGVLRFAMGAGAKGVEVVI 139
Query: 460 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKN 639
SGKLR RAKS K+ DG MIHSG P D+++ A RHVL+RQGVLGIKVKIM +
Sbjct: 140 SGKLRAARAKSQKYADGFMIHSGQPTRDFIDIAIRHVLMRQGVLGIKVKIMKD-PAANRF 198
Query: 640 GPKKPQPDHILVTEPKDE 693
GP + PD + + E KDE
Sbjct: 199 GP-RALPDAVKIAEAKDE 215
>UniRef50_Q38EW1 Cluster: 40S ribosomal protein S3, putative; n=4;
Trypanosoma|Rep: 40S ribosomal protein S3, putative -
Trypanosoma brucei
Length = 266
Score = 230 bits (563), Expect = 2e-59
Identities = 115/196 (58%), Positives = 146/196 (74%)
Frame = +1
Query: 100 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 279
AEL EFL RELA+DG++GVE RVTP R+EI+I +T+T+ VLGEKGRRIRELT+ +Q+RFN
Sbjct: 70 AELFEFLKRELADDGFAGVEHRVTPTRTEIVIRSTKTREVLGEKGRRIRELTACLQQRFN 129
Query: 280 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 459
E ++L+AE+V RGL A+AQAESLR+KL+ L VRRA G++R++MESGA+GCEV +
Sbjct: 130 YKEGKLQLFAERVEVRGLSAMAQAESLRFKLLSNLQVRRAAMGIIRYVMESGAKGCEVTI 189
Query: 460 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKN 639
GK++GQRAKSM F DG MI SG +V+TATRH LR G +G+ VKIM P Q
Sbjct: 190 GGKIKGQRAKSMTFRDGYMIKSGTAHKHFVDTATRHCHLRAGTIGVNVKIMRP---QSMI 246
Query: 640 GPKKPQPDHILVTEPK 687
+ PD I V EPK
Sbjct: 247 EEDEVLPDVITVIEPK 262
>UniRef50_A2DIM3 Cluster: Ribosomal protein S3, putative; n=1;
Trichomonas vaginalis G3|Rep: Ribosomal protein S3,
putative - Trichomonas vaginalis G3
Length = 216
Score = 212 bits (518), Expect = 7e-54
Identities = 98/197 (49%), Positives = 137/197 (69%)
Frame = +1
Query: 100 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 279
AELNE LTREL ++GY G EVR TP R+EIII A T+ + GRR++E+ ++QKR+
Sbjct: 20 AELNELLTRELTKEGYGGCEVRQTPTRTEIIIKAANTKEFVDNHGRRLQEVRMMIQKRWR 79
Query: 280 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 459
+ E S+E++ +++ +GL A+ Q ESLRYKLI + RRA Y ++RF+M++GARGCEV +
Sbjct: 80 LKEDSLEIFIDRIQRKGLSALNQLESLRYKLIARIPARRAAYSIIRFVMDAGARGCEVAI 139
Query: 460 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKN 639
SGKLRG RA + K+ +G M+ SGD +V A H+ ++Q +GI+V IML D G +
Sbjct: 140 SGKLRGARASTSKYKEGYMVKSGDVTKQFVTQAVGHIPMKQATIGIRVLIMLAQDPSGIS 199
Query: 640 GPKKPQPDHILVTEPKD 690
GPK+ QPD I V E KD
Sbjct: 200 GPKESQPDVIKVHEAKD 216
>UniRef50_Q22AV9 Cluster: KH domain containing protein; n=3;
Oligohymenophorea|Rep: KH domain containing protein -
Tetrahymena thermophila SB210
Length = 253
Score = 204 bits (498), Expect = 2e-51
Identities = 94/216 (43%), Positives = 145/216 (67%), Gaps = 2/216 (0%)
Frame = +1
Query: 100 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 279
AEL+ F ++ L + GY+G+EVR TP ++EI I AT+ Q V+G +G++ +ELT +QKRF
Sbjct: 32 AELHSFFSKSLQDAGYAGIEVRRTPTKTEIRIKATKPQQVIGVEGKKHKELTQFLQKRFG 91
Query: 280 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 459
+ ++++AE + +GLCA AQ E++ YKL+ + VR A +++ +++ GA+GCE+++
Sbjct: 92 YSDDQIQIWAEPIKFKGLCASAQVEAMNYKLLKDVPVRLAANYIIKSVIQDGAKGCEIII 151
Query: 460 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQ--G 633
SGKL+ QRAK+MKF G MI +G P NDY++ A RHV +QG++G+KVKIMLP++
Sbjct: 152 SGKLKQQRAKTMKFKQGYMICTGQPKNDYIDVAVRHVFFKQGIMGVKVKIMLPYEPNPAK 211
Query: 634 KNGPKKPQPDHILVTEPKDEPVPLEPTXEVRSLAPA 741
K G K P PD++++ PK E V PA
Sbjct: 212 KFGVKTPIPDNVIIHPPKQITDDKEIRTAVEQQQPA 247
>UniRef50_A7NTL0 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 617
Score = 195 bits (475), Expect = 1e-48
Identities = 113/195 (57%), Positives = 129/195 (66%)
Frame = +1
Query: 100 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 279
A LNE LTREL E+GYSG EVRVTP+ +EIII AT+T +VLGEKG++I+ELTSVVQKRF
Sbjct: 19 AGLNEVLTRELVENGYSGDEVRVTPMCTEIIIRATQTHNVLGEKGKKIKELTSVVQKRFE 78
Query: 280 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 459
E SVEL AEKV RG AIAQAESLRYKL+GGLA+
Sbjct: 79 FLENSVELCAEKVNNRGFYAIAQAESLRYKLLGGLAM----------------------- 115
Query: 460 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKN 639
L QRAKSMKF DG +I SG P DY++ A RHV LRQGVLGIKVKIM WD +GK
Sbjct: 116 ---LCAQRAKSMKFKDGYLISSGQPVKDYIDLAVRHV-LRQGVLGIKVKIMFNWDPKGKQ 171
Query: 640 GPKKPQPDHILVTEP 684
P PD + + P
Sbjct: 172 SLTTPLPDLVTIQTP 186
>UniRef50_Q8SQM3 Cluster: 40S ribosomal protein S3; n=1;
Encephalitozoon cuniculi|Rep: 40S ribosomal protein S3 -
Encephalitozoon cuniculi
Length = 228
Score = 190 bits (464), Expect = 2e-47
Identities = 87/197 (44%), Positives = 130/197 (65%)
Frame = +1
Query: 100 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 279
AEL EF + L +G+S +E+R+ +II+ + +GEK R+R+ + +R
Sbjct: 30 AELKEFFEKALVNEGFSTMELRMQETPIKIILKVAKPHEAIGEKKFRLRQFQHLAAQRLE 89
Query: 280 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 459
+P++SVE+ EKV +GLCA+ QA +R K++GG+ RRA L+ + A+GC+++V
Sbjct: 90 VPDESVEIVVEKVHEKGLCALIQANFIREKILGGVQYRRAVNMALKTARHAKAQGCQIIV 149
Query: 460 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKN 639
SGKL+GQRAKS+KF DG++IHSGD DY+NT V +QGV+GI+V+IMLP+D +G
Sbjct: 150 SGKLKGQRAKSVKFQDGVLIHSGDAVKDYINTGYATVETKQGVIGIQVRIMLPYDPEGVL 209
Query: 640 GPKKPQPDHILVTEPKD 690
GP P PD I + EP +
Sbjct: 210 GPNYPLPDRITILEPSE 226
>UniRef50_A7NXL1 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 243
Score = 167 bits (407), Expect = 2e-40
Identities = 91/154 (59%), Positives = 108/154 (70%)
Frame = +1
Query: 184 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 363
EIII AT+TQ+VLG+KGR+IRELTSVVQKRF E +VELYAEK R AIAQAESLR
Sbjct: 101 EIIIHATQTQNVLGKKGRKIRELTSVVQKRFEFLENNVELYAEKFNNRVFYAIAQAESLR 160
Query: 364 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCND 543
+KL+GGL VRRA YGVL F+MESG +GCEV+ +I SG P D
Sbjct: 161 FKLLGGLVVRRAGYGVLSFVMESGTKGCEVI----------------GWYIISSGQPVKD 204
Query: 544 YVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 645
Y+N+ RHVLL+QGVL IKVKI++ QG+ GP
Sbjct: 205 YINSVVRHVLLKQGVLSIKVKIIVRLGSQGQAGP 238
>UniRef50_Q01BA3 Cluster: Putative ribosomal protein; n=1;
Ostreococcus tauri|Rep: Putative ribosomal protein -
Ostreococcus tauri
Length = 145
Score = 145 bits (352), Expect = 9e-34
Identities = 66/108 (61%), Positives = 84/108 (77%)
Frame = +1
Query: 388 VRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 567
VR ACYGVLR+IMESGA+G EVVVSGKLRGQRAK+MKF DG MI SG+P DY+ + TRH
Sbjct: 30 VRSACYGVLRYIMESGAKGAEVVVSGKLRGQRAKAMKFKDGYMISSGNPVRDYIVSCTRH 89
Query: 568 VLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 711
LLRQG +G++VKIML D +G++GP P PD +++ PK++ +P
Sbjct: 90 ALLRQGTIGMRVKIMLDHDPKGRDGPSTPIPDTVVIHTPKEDEDMAKP 137
>UniRef50_Q8U004 Cluster: 30S ribosomal protein S3P; n=5;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Pyrococcus furiosus
Length = 210
Score = 138 bits (334), Expect = 1e-31
Identities = 71/171 (41%), Positives = 105/171 (61%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
++EFL +EL GY G++++ TP+ +++II A V+G GRRIRELT +++K+F +
Sbjct: 17 IDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLE 76
Query: 286 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 465
+E+ E++ L A QA L L G+ RRA Y LR IM +GARG E+ +SG
Sbjct: 77 NPQIEV--EEIKNPYLNAKVQAVRLAQALERGIHFRRAAYAALRAIMNNGARGVEIRLSG 134
Query: 466 KLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 618
KL G+RAKS++F G + G+P V+ LL+ GV+G+KV IM P
Sbjct: 135 KLTGERAKSIRFYQGYLAKVGNPAETLVSKGYAQALLKLGVIGVKVAIMPP 185
>UniRef50_Q7QNT9 Cluster: GLP_157_11435_12088; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_157_11435_12088 - Giardia lamblia
ATCC 50803
Length = 217
Score = 136 bits (330), Expect = 4e-31
Identities = 66/173 (38%), Positives = 107/173 (61%)
Frame = +1
Query: 100 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 279
AEL+EF +REL + GY+ + T +II + V+G+ R+ ++ ++ RF
Sbjct: 25 AELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKIEYLLAGRFM 84
Query: 280 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 459
++ ++ +K+ RGL A ++LR KL + +RRA Y ++R M +GA GCEV+V
Sbjct: 85 CDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRAGAAGCEVIV 144
Query: 460 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 618
+GKLR QRA++ KF +G +I +G P ++ ATRH+ +RQGV+G+KV+I P
Sbjct: 145 AGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMRQGVIGVKVRIYNP 197
>UniRef50_A3CT03 Cluster: 30S ribosomal protein S3P; n=4;
Archaea|Rep: 30S ribosomal protein S3P - Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Length = 234
Score = 120 bits (290), Expect = 3e-26
Identities = 69/203 (33%), Positives = 111/203 (54%), Gaps = 1/203 (0%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
+ +FLT+EL GY G+++ TP+ +++ I A + V+G+ G+++R+LT + ++I
Sbjct: 17 VEKFLTKELKRAGYGGMDIARTPLGTQVTIFAEKPGIVIGKGGKQVRQLTQDLATDYDIE 76
Query: 286 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 465
VE+ ++V A AE L L G R+A +R IMESGA GCEV+V+G
Sbjct: 77 SPQVEV--QQVQNPNFNAQIMAERLANALERGWYFRKAGSSTIRRIMESGALGCEVIVAG 134
Query: 466 KLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 645
KL G R+++ KF +G + H G+P V + + G +G++VKI+ P
Sbjct: 135 KLTGSRSRTQKFTEGYIKHCGEPSETIVEKGYALAIKKLGTIGVQVKIVPP-------DA 187
Query: 646 KKPQPDHILVTEPKDEPV-PLEP 711
+ P +L EPK P P+EP
Sbjct: 188 RLPDAFDVLEPEPKKAPAEPIEP 210
>UniRef50_Q8TRU1 Cluster: 30S ribosomal protein S3P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S3P -
Methanosarcina acetivorans
Length = 318
Score = 120 bits (288), Expect = 5e-26
Identities = 71/225 (31%), Positives = 122/225 (54%), Gaps = 10/225 (4%)
Frame = +1
Query: 100 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 279
A ++E+ +L+ GY G+E+ TP+ ++I+I + + V+G+ G+ IR+LT V +++
Sbjct: 15 ASMDEYFAEQLSRAGYGGMELNRTPMGTQIVIYSEKPGMVIGKAGKVIRKLTRDVANKYS 74
Query: 280 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 459
+ ++ A++V L A A L + G R+A + LR +M +GA GCEVV+
Sbjct: 75 LENPQID--AQEVKRPELNAQMMASRLAASIERGWYFRKAGHNTLRAVMNAGALGCEVVI 132
Query: 460 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI-----MLPWD 624
SGKL G R++ KFVDG + HSG+P + V+ + + G LG KV+I +LP
Sbjct: 133 SGKLTGARSRVEKFVDGYIKHSGNPVEEVVDEGFAVAVKKLGTLGCKVRIIQPGVVLPDS 192
Query: 625 QQGKNGPKKPQPDHILVTEPKDEP-----VPLEPTXEVRSLAPAP 744
+ + + +P +P ++P P + + R+ APAP
Sbjct: 193 YKVRESVEVEEPAEKPAEKPAEKPAEKAAAPKKEAAKARAPAPAP 237
>UniRef50_O26116 Cluster: 30S ribosomal protein S3P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S3P -
Methanobacterium thermoautotrophicum
Length = 258
Score = 116 bits (279), Expect = 6e-25
Identities = 66/205 (32%), Positives = 109/205 (53%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
++E+L +EL GY G++V+VTP+ + +++ A R V+G G+ +R +T ++ +F++
Sbjct: 16 IDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRAITQKLKNKFDLE 75
Query: 286 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 465
VE+ ++V L A + L G+ RR Y +R IM +GA+G EV +SG
Sbjct: 76 NPQVEV--KEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRIMAAGAQGVEVTISG 133
Query: 466 KLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 645
K+RG R+ + KF DG + G+P +V V L+ GVLG+ V+IM P
Sbjct: 134 KIRGARSATAKFTDGYIKKCGEPSVKHVREGFATVQLKPGVLGVYVRIM---------PP 184
Query: 646 KKPQPDHILVTEPKDEPVPLEPTXE 720
PD + + +P+ P E E
Sbjct: 185 DVVLPDKVEIEDPRVTETPAEEASE 209
>UniRef50_A1RXG6 Cluster: 30S ribosomal protein S3P; n=2;
Thermofilum pendens Hrk 5|Rep: 30S ribosomal protein S3P
- Thermofilum pendens (strain Hrk 5)
Length = 202
Score = 114 bits (274), Expect = 3e-24
Identities = 63/171 (36%), Positives = 97/171 (56%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
LNE+L R+L Y + TPI +++I+ A V+G KG I+ + V+++ F I
Sbjct: 18 LNEYLQRQLVRANYVHAQFFKTPIGTKVIVYAGVPGLVIGRKGANIKAIAEVLEREFGIE 77
Query: 286 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 465
+++ +V + L A A + L+ G+ RRA L IM +GARG E+V+SG
Sbjct: 78 NPQIDVV--EVPNQDLNAKIMAYRVARALVRGVRFRRAALVALNRIMAAGARGAEIVISG 135
Query: 466 KLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 618
KL QR ++ KF G + SG+P + V+ A HVLL+ G+ G+KV+IM P
Sbjct: 136 KLTSQRHRTEKFTRGYVPKSGEPGEELVDEAIVHVLLKLGMYGVKVRIMKP 186
>UniRef50_P20281 Cluster: 30S ribosomal protein S3P; n=5;
Halobacteriaceae|Rep: 30S ribosomal protein S3P -
Haloarcula marismortui (Halobacterium marismortui)
Length = 304
Score = 113 bits (273), Expect = 3e-24
Identities = 58/172 (33%), Positives = 105/172 (61%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
+++EF EL GY G++V TP+ ++I++ A + V+G+ G+ IR++T+ ++ RFN+
Sbjct: 16 QIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGKNIRKITTELEDRFNL 75
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
+ V++ ++V L A A+ L L G R+A + + IMESGA G E+V+S
Sbjct: 76 DDPQVDV--QEVDEPDLNARIVADRLANALERGWYFRKAGHTTIDRIMESGALGAEIVLS 133
Query: 463 GKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 618
GK+ G R++ KF G + H+G+P + V++ +++ G +G++VKI+ P
Sbjct: 134 GKVTGARSRVEKFNRGYVKHNGEPAEEIVDSGVGVAVMKLGTIGVRVKIIPP 185
>UniRef50_Q6LXE7 Cluster: 30S ribosomal protein S3P; n=5;
Methanococcus|Rep: 30S ribosomal protein S3P -
Methanococcus maripaludis
Length = 211
Score = 113 bits (272), Expect = 4e-24
Identities = 54/171 (31%), Positives = 97/171 (56%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
++E+ +L GYS ++ + TPI + I + A + V+G KG+ ++ELT + +++
Sbjct: 16 IDEYFKTKLVRAGYSHIDFKKTPIGTRITVFAEKPGFVIGRKGKMVKELTETLATEYSVK 75
Query: 286 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 465
+E+ ++V L + L G+ R+ + +R +M SGA+G ++VSG
Sbjct: 76 NPQIEV--KQVENPDLDPAVVGHKIASSLERGMHFRKTAHSAIRRVMGSGAKGVAIIVSG 133
Query: 466 KLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 618
KL G+R+++ KF+DG M H G+P VN + + L+ G++G+ VKIM P
Sbjct: 134 KLSGERSRTEKFMDGYMKHCGEPAEALVNKSHQLAKLKLGIVGVTVKIMRP 184
>UniRef50_UPI00015BB204 Cluster: SSU ribosomal protein S3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: SSU ribosomal protein
S3P - Ignicoccus hospitalis KIN4/I
Length = 241
Score = 112 bits (270), Expect = 8e-24
Identities = 70/206 (33%), Positives = 116/206 (56%), Gaps = 3/206 (1%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
+++E+L + GYS VE++ TP+ + +II A R+ +++G +G+ I+++T V+++ F I
Sbjct: 21 KVDEYLAYKFHSVGYSKVELQKTPMGTRVIIYAERSGAIIGRRGQTIKQITKVLEEWFGI 80
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
P V + KV L A A L L G RRA Y LR IM +GA G +V VS
Sbjct: 81 PNPQVTVV--KVEEPELDARVMAFRLANALQRGFHFRRAAYTTLRRIMGAGAIGAQVKVS 138
Query: 463 GKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNG 642
GKLRG+RA+ K++ G + SG+ + A HVLL+ GV G++V I +++ +
Sbjct: 139 GKLRGERARFEKYIAGKVYKSGNQVVRLTDRAIAHVLLKVGVEGVEVIISKKSEEERPDD 198
Query: 643 P---KKPQPDHILVTEPKDEPVPLEP 711
K P+ + +V + ++E +P
Sbjct: 199 EVRIKSPEEVNEIVQKIREEMQQTQP 224
>UniRef50_Q8TX35 Cluster: 30S ribosomal protein S3P; n=1;
Methanopyrus kandleri|Rep: 30S ribosomal protein S3P -
Methanopyrus kandleri
Length = 227
Score = 109 bits (262), Expect = 7e-23
Identities = 59/172 (34%), Positives = 98/172 (56%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
EL+E+L EL GY G+ ++ P ++II R +G +GR IR + VQ+RF +
Sbjct: 23 ELDEYLEEELGRAGYGGMRLQRVPNATKIIAYVERPAIAIGRRGRNIRRVEEEVQERFPL 82
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
+ V + +++ + L A L L G+ RRA YG LR IM +GA+G +++S
Sbjct: 83 LGR-VSIEVKELPSPELNPRVVARRLASALERGIHFRRAAYGALRRIMNAGAKGAMIILS 141
Query: 463 GKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 618
GKL G RA++ KF++G + + G+P ++Y+ + + G +G+ V+IM P
Sbjct: 142 GKLIGARARTEKFMEGAVKYCGEPGDEYMIEGYVQAVTKPGAIGVTVRIMPP 193
>UniRef50_O28360 Cluster: 30S ribosomal protein S3P; n=1;
Archaeoglobus fulgidus|Rep: 30S ribosomal protein S3P -
Archaeoglobus fulgidus
Length = 229
Score = 106 bits (254), Expect = 7e-22
Identities = 61/171 (35%), Positives = 95/171 (55%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
+ E++ E+ G+ GV++ TP+ +++ + R V+G+ GRRI+ LT + K F I
Sbjct: 17 VKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGRRIKALTEKL-KDFGIE 75
Query: 286 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 465
V + ++V A A L L G RRA Y L IME+GA+GCE+ +SG
Sbjct: 76 NPQVSV--DEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIMEAGAKGCEIEISG 133
Query: 466 KLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 618
KL +RA++ KFV G ++H+GDP V + + GVLG+ V+I+ P
Sbjct: 134 KLVSERARTEKFVAGTIVHTGDPAESMVQKGFDIAIKKLGVLGVSVRIIPP 184
>UniRef50_Q8LNX7 Cluster: Putative ribosomal protein S3; n=1; Zinnia
elegans|Rep: Putative ribosomal protein S3 - Zinnia
elegans (Zinnia)
Length = 143
Score = 103 bits (248), Expect = 4e-21
Identities = 46/70 (65%), Positives = 55/70 (78%)
Frame = +1
Query: 478 QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQ 657
QRAKSMKF DG M+ SG P +Y+++A RHVLLRQGVLGIKVKIML WD GK GPK P
Sbjct: 2 QRAKSMKFKDGYMVSSGQPVKEYIDSAVRHVLLRQGVLGIKVKIMLDWDPTGKLGPKTPL 61
Query: 658 PDHILVTEPK 687
PD++++ PK
Sbjct: 62 PDNVVIHMPK 71
>UniRef50_Q9UXA0 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P - Sulfolobus
solfataricus
Length = 229
Score = 101 bits (241), Expect = 3e-20
Identities = 61/194 (31%), Positives = 100/194 (51%), Gaps = 2/194 (1%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
+++E+L ++ Y+GVEV TPI + +II A R ++G GR I++L + +K F +
Sbjct: 17 KIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQLAQIFEKVFGL 76
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
+ + V L A A L L G RRA + +R IM +GA G E+++S
Sbjct: 77 ENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMNAGALGAEIIIS 134
Query: 463 GKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGK-N 639
GKL +RA+ K +G++ SG ++ A +L+ G+ G++V I P + K N
Sbjct: 135 GKLTTERARYEKLKEGIVYKSGQQLEKMIDRAIAIAMLKPGIFGVEVVITKPLKIEDKIN 194
Query: 640 GPKKPQ-PDHILVT 678
+ P P + VT
Sbjct: 195 LKESPSVPQEVSVT 208
>UniRef50_Q4JB46 Cluster: 30S ribosomal protein S3P; n=3;
Sulfolobaceae|Rep: 30S ribosomal protein S3P -
Sulfolobus acidocaldarius
Length = 231
Score = 99 bits (238), Expect = 6e-20
Identities = 59/171 (34%), Positives = 92/171 (53%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
++E+L ++ Y+GVE+ TPI + +II A R ++G+ G+ I++L V++K F +
Sbjct: 18 VDEYLAKQFYNAEYAGVEIVKTPIGTRVIIYAGRPPLIIGKGGKTIKQLAQVLEKFFGLE 77
Query: 286 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 465
+ + A + L A A L L G RRA + +R IM SGA G EV+VSG
Sbjct: 78 NPQITVTAAE--NPELNARVMAFRLAIALEKGYHFRRAAFITIRRIMSSGAVGAEVIVSG 135
Query: 466 KLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 618
KL +RAK K +G + SG ++ A +L+ GV G++V I P
Sbjct: 136 KLTSERAKYEKLKEGTVYKSGQQLEKIIDRAIGIAMLKPGVYGVEVVITKP 186
>UniRef50_A3DNB3 Cluster: 30S ribosomal protein S3P; n=1;
Staphylothermus marinus F1|Rep: 30S ribosomal protein
S3P - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 224
Score = 95.5 bits (227), Expect = 1e-18
Identities = 66/215 (30%), Positives = 109/215 (50%), Gaps = 4/215 (1%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
L+EFL + GY+G+E+ TP ++I A ++G G IR+L +++Q F +
Sbjct: 20 LDEFLANYFKDAGYAGMELYKTPTGYRVVIYAEYPGRIIGRGGSIIRKLMTIMQTHFGL- 78
Query: 286 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 465
++V + V L A A + L + RR +LR +ME+GA G E+++SG
Sbjct: 79 -ENVNITVSPVPDPDLNARIVAFRIVRALEKEIPYRRVAMAMLRRVMEAGAVGAEIIISG 137
Query: 466 KLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 645
KLR +RA+ K G + +GD + V+ A LL++GV G++V I+ P
Sbjct: 138 KLRSERARYEKLKAGRIYKAGDMVDYVVDRAVGKALLKRGVYGVEVVIVRP--------H 189
Query: 646 KKPQPDHILVTEPKDEP----VPLEPTXEVRSLAP 738
KP PD++ + K E +P+E S++P
Sbjct: 190 LKP-PDYVEIKSVKPEELADLIPVEKEETNESISP 223
>UniRef50_Q8ZWI0 Cluster: 30S ribosomal protein S3P; n=6;
Pyrobaculum|Rep: 30S ribosomal protein S3P - Pyrobaculum
aerophilum
Length = 218
Score = 95.5 bits (227), Expect = 1e-18
Identities = 51/169 (30%), Positives = 91/169 (53%), Gaps = 1/169 (0%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
+ EFL L++ GY E+ TP+ + I+I A R ++G KG ++E+++++ + +
Sbjct: 24 IKEFLEYRLSKYGYIDSEILKTPLGTRIVIYAERPSRIIGRKGAIVKEISNILTTKLGVE 83
Query: 286 EQSVELY-AEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
+++ K+ + A + + G+ RR + +R +ME+GA+G E+VVS
Sbjct: 84 NPQIDVIDISKIEAPEMFPKVVAYRIANAMAKGVRFRRVMFVAIRQLMEAGAKGFEIVVS 143
Query: 463 GKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 609
GKL +RA+ K G + G + V A HVLL+ G+ GI+V+I
Sbjct: 144 GKLSTERARFEKQTYGKLYKIGYDAKNRVRRAVVHVLLKPGIYGIEVRI 192
>UniRef50_A0RVX9 Cluster: 30S ribosomal protein S3P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S3P -
Cenarchaeum symbiosum
Length = 261
Score = 93.9 bits (223), Expect = 4e-18
Identities = 69/220 (31%), Positives = 109/220 (49%), Gaps = 6/220 (2%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
+L EFL + + G+SGVEV P ++I + TR V+G KG IRELT ++K F++
Sbjct: 16 KLREFLRENIKDSGFSGVEVEKNPRGTKITLHVTRPGIVIGRKGVGIRELTERLEKDFDL 75
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIME-SGARGCEVVV 459
V++ +++ T L + + G A RRA ++ IME A G ++ +
Sbjct: 76 KSPQVDV--KEIETPELYPGVMCNRMASHIERGTAFRRATMWTIQQIMEKKDAMGVQITI 133
Query: 460 SGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKN 639
SGKLRG R+ K G++ +G + V HV G++GI+++I D+ K+
Sbjct: 134 SGKLRGDRSAFEKHTSGILPRAGHYADVIVLDDVVHVKTPMGLIGIRIRIARR-DKFRKD 192
Query: 640 GPKKPQPDHILVTEP-----KDEPVPLEPTXEVRSLAPAP 744
K + D + +P KDE P T E + A AP
Sbjct: 193 FEMKAEKDVVPAPKPEHHDVKDETDPSAGT-EAKDGAAAP 231
>UniRef50_A5DF25 Cluster: Putative uncharacterized protein; n=1;
Pichia guilliermondii|Rep: Putative uncharacterized
protein - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 278
Score = 91.5 bits (217), Expect = 2e-17
Identities = 59/210 (28%), Positives = 103/210 (49%)
Frame = -1
Query: 693 LVLGLCHQDXXXXXXXXXXXXXXVPRQHDFDLDS*YSLSEKHMSGSSVDVIITRVSRVDH 514
L+LGL QD V H+ D D+ +LS +H+S +V+ ++ ++RVDH
Sbjct: 57 LILGLGDQDSIGQSLRANSGGSWV--LHNLDSDTQNTLSHQHVSDGNVNKVVGWLTRVDH 114
Query: 513 ESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKLVS*RFGLGDSA 334
E++ L G+ ++Q +N T T H ++++T+ +++ +T +L FGL S
Sbjct: 115 ETVRVLLRLGSSSSQFTGDDNLHTLSTSSHGKSQHTVGGSSHWQTVQQLGFQGFGLDSSG 174
Query: 333 KTTSSHLFSIQFYRLLWNVESLLYYGSQLTDSASFLSEHTLCPGGHNNDLRADGSDPHFH 154
+T+ + +ESL G QL DS S S++TL G +N+L+ +
Sbjct: 175 QTSLLDSLGVDDNSFRRQLESLDNQGGQLVDSTSLFSQNTLGVGSLDNNLQLGWGLSDLN 234
Query: 153 AGVAVLGQLPSEELIEFRLENPXSNKFSLL 64
GV + Q EE ++ +E+ S + S L
Sbjct: 235 TGVTLFSQFSGEEFVQLGVEDTISYQLSFL 264
>UniRef50_A3H696 Cluster: Ribosomal protein S3-like; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein S3-like -
Caldivirga maquilingensis IC-167
Length = 226
Score = 88.6 bits (210), Expect = 1e-16
Identities = 48/197 (24%), Positives = 104/197 (52%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
+ E+L L + Y ++ T + + I+I+A + ++G KG++++ L +++ +FN+
Sbjct: 15 IKEYLNIALTRNRYVDSIIQRTTLGTRIVIIAEKKNRIIGRKGQQVKALADILKSKFNLD 74
Query: 286 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 465
+++ E +A + + G+ RRA LR + E+ +G EV++SG
Sbjct: 75 NVVIDVIQEPHPEYNARLVALR--IADAMAKGIRFRRAAIIALRQLQEANVQGAEVIISG 132
Query: 466 KLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGP 645
KL +R++ K+ G++I +G + V A VLL+ G+ ++V++ LP D + +
Sbjct: 133 KLTTERSRFEKYTTGIVIKAGQDALEKVQEAVIPVLLKPGIFSVRVRV-LPPDAKLSDRF 191
Query: 646 KKPQPDHILVTEPKDEP 696
+ P+ + V + +++P
Sbjct: 192 EVKSPEEVQVKQIENKP 208
>UniRef50_UPI00005A35DE Cluster: PREDICTED: similar to 40S ribosomal
protein S3; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S3 - Canis familiaris
Length = 161
Score = 87.8 bits (208), Expect = 2e-16
Identities = 43/69 (62%), Positives = 50/69 (72%)
Frame = +1
Query: 421 IMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIK 600
+ ESGA+G E +VSGKL+GQRAKS KFVD MIHS D N YV+T+ HVLLRQGVLG K
Sbjct: 80 VQESGAKGYEAMVSGKLQGQRAKSAKFVDDSMIHSRDCVNHYVDTSVHHVLLRQGVLGSK 139
Query: 601 VKIMLPWDQ 627
+ P Q
Sbjct: 140 CRSCFPGTQ 148
Score = 72.9 bits (171), Expect = 8e-12
Identities = 36/44 (81%), Positives = 39/44 (88%)
Frame = +1
Query: 100 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEK 231
AELNEFLTRELAEDG S VEVRVTP + EIII+ TRTQ+VLGEK
Sbjct: 19 AELNEFLTRELAEDGDSRVEVRVTPTKPEIIILTTRTQNVLGEK 62
>UniRef50_Q9HIR5 Cluster: 30S ribosomal protein S3P; n=4;
Thermoplasmatales|Rep: 30S ribosomal protein S3P -
Thermoplasma acidophilum
Length = 225
Score = 86.6 bits (205), Expect = 6e-16
Identities = 46/169 (27%), Positives = 92/169 (54%)
Frame = +1
Query: 112 EFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 291
E++ +E G+ + ++ TP + I + R V+G +G +++++T ++K++ I
Sbjct: 18 EYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKVQQMTDTLEKKYGIETP 77
Query: 292 SVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKL 471
+E+ + V L A+ + L G + R+A L +++GA+G + +SGK+
Sbjct: 78 QIEV--KDVKDPDLNPSVIAKKIALSLEKGWSYRKAGNTSLNRTIQAGAKGVLIKISGKI 135
Query: 472 RGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 618
G+RA+ KF+ G + +SG+P + + T L+ G+LG+ VKI+ P
Sbjct: 136 SGERARYQKFIYGNVKYSGEPGSKGMITGFSTAKLKVGILGVTVKILNP 184
>UniRef50_Q673S3 Cluster: Ribosomal protein S3; n=2; environmental
samples|Rep: Ribosomal protein S3 - uncultured marine
group II euryarchaeote DeepAnt-JyKC7
Length = 307
Score = 83.8 bits (198), Expect = 4e-15
Identities = 49/171 (28%), Positives = 86/171 (50%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
+ E+L RE G+ G+E TP +++ + A + V+G +G+ I EL ++ F +
Sbjct: 21 VREYLLRETERAGFGGLEFNRTPEGTKVTLSAEQVGRVIGRRGKVIHELQYRLKSDFKLE 80
Query: 286 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 465
+E+ ++ L A A L L G RRA + + IM++GARGC +++SG
Sbjct: 81 NPRLEV--NEIEEPRLNAQVMASRLASSLERGWFFRRAGHSTAQNIMDAGARGCLIILSG 138
Query: 466 KLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 618
K+ G R + KF G + G+ +++ + + G +G V+IM P
Sbjct: 139 KISGPRHRVQKFQQGHIKFCGETALQFMDEGFSTAVKKLGTVGCTVRIMRP 189
>UniRef50_A7NXL5 Cluster: Chromosome chr5 scaffold_2, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr5 scaffold_2, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 149
Score = 69.3 bits (162), Expect = 9e-11
Identities = 33/45 (73%), Positives = 39/45 (86%)
Frame = +1
Query: 127 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 261
+++EDGYSGV+VRVTP+R EIII ATRTQ+ LGEK RRIREL V
Sbjct: 16 DISEDGYSGVQVRVTPMRMEIIIHATRTQNALGEKRRRIRELILV 60
>UniRef50_A5ATU8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 286
Score = 66.5 bits (155), Expect = 7e-10
Identities = 31/46 (67%), Positives = 38/46 (82%)
Frame = +1
Query: 127 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVV 264
++ EDGYS V+VRVTP+ EII+ ATRTQ+ L EKGRRIRELT V+
Sbjct: 139 DILEDGYSNVKVRVTPMGMEIIVRATRTQNALSEKGRRIRELTLVM 184
>UniRef50_A7QEK7 Cluster: Chromosome chr17 scaffold_85, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr17 scaffold_85, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 514
Score = 66.1 bits (154), Expect = 9e-10
Identities = 32/45 (71%), Positives = 37/45 (82%)
Frame = +1
Query: 127 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSV 261
++ EDGYS V+VRVTP+ EIII ATRTQ+ L EKGRRIRELT V
Sbjct: 406 DILEDGYSDVKVRVTPMGMEIIIRATRTQNALSEKGRRIRELTLV 450
Score = 42.7 bits (96), Expect = 0.009
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +1
Query: 127 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVL 222
++ EDGYS ++V+VT +R EIII ATRTQ+ L
Sbjct: 281 DIPEDGYSDIKVKVTGMRMEIIIHATRTQNAL 312
>UniRef50_Q3LWD3 Cluster: Ribosomal protein S3; n=1; Bigelowiella
natans|Rep: Ribosomal protein S3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 262
Score = 65.7 bits (153), Expect = 1e-09
Identities = 32/120 (26%), Positives = 64/120 (53%), Gaps = 1/120 (0%)
Frame = +1
Query: 256 SVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKL-IGGLAVRRACYGVLRFIMES 432
+++ F I +++ + + + + Q+ ++ + R + LRF++ S
Sbjct: 112 NIISHLFFINSNKLKILYKNYKSSNISTMTQSSRMKEAFNYTNKSFRSIIFNTLRFLINS 171
Query: 433 GARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIM 612
G RGC + + G R +R K+ KF GL+ HSG ND++++ + ++ ++G LGI +KIM
Sbjct: 172 GVRGCMIKLKGVYRSKRTKTFKFRRGLISHSGIQNNDWIDSDSFYLNKKRGTLGINIKIM 231
>UniRef50_Q74MZ4 Cluster: 30S ribosomal protein S3P; n=2;
Nanoarchaeum equitans|Rep: 30S ribosomal protein S3P -
Nanoarchaeum equitans
Length = 230
Score = 65.7 bits (153), Expect = 1e-09
Identities = 51/170 (30%), Positives = 82/170 (48%), Gaps = 1/170 (0%)
Frame = +1
Query: 112 EFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 291
EF+ L S V +R TPI + +II + R + + E R L +++ +F + +
Sbjct: 21 EFIRLYLRGANVSKVIIRQTPIVNRVIIYSARPKMISEE---RKAHLAKLLELKFGLEKP 77
Query: 292 SVELYAEKVATRGLCAIAQAESLRYKLIGGL-AVRRACYGVLRFIMESGARGCEVVVSGK 468
+E+ + L A AE L + + A RR L IM +GA G E+V++G+
Sbjct: 78 VIEVLP--IENPNLDAHVIAERLAMGIERNIRAYRRLAQRYLETIMNAGAIGAEIVIAGR 135
Query: 469 LRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLP 618
L GQR K+ +F G + +G ++ A L+ GV GI V I+ P
Sbjct: 136 LSGQRGKTWRFKAGNLRKTGTIGQFELDRAFNIAYLKPGVAGIHVTILKP 185
>UniRef50_Q9RXJ6 Cluster: 30S ribosomal protein S3; n=2;
Deinococcus|Rep: 30S ribosomal protein S3 - Deinococcus
radiodurans
Length = 249
Score = 63.7 bits (148), Expect = 5e-09
Identities = 45/171 (26%), Positives = 89/171 (52%), Gaps = 2/171 (1%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ + + ++LA G + +E+ + +II A + V+G+ G I+EL +++ +
Sbjct: 38 QIRQLINKKLAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIERL--V 95
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
+V + ++ + A A + ++ A RRA + +MESGARG +V++S
Sbjct: 96 SAGTVAVNVAEIPNPNISAPLVALRIAEQIERRFAFRRAMKQAAQRVMESGARGVKVILS 155
Query: 463 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 609
G+L G ++A++ K ++G + +H+ DY R G+LGIKV +
Sbjct: 156 GRLGGAEQARTEKVLEGRVPLHTLRADIDYGTALAR---TTYGILGIKVLV 203
>UniRef50_Q7MTL9 Cluster: 30S ribosomal protein S3; n=19;
Bacteroidetes|Rep: 30S ribosomal protein S3 -
Porphyromonas gingivalis (Bacteroides gingivalis)
Length = 246
Score = 57.6 bits (133), Expect = 3e-07
Identities = 47/172 (27%), Positives = 84/172 (48%), Gaps = 2/172 (1%)
Frame = +1
Query: 100 AELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 279
+ + ++L LA+ S + + I I R ++G+ G+ + +L +++
Sbjct: 36 SRIRQYLNARLAKASVSRIVIERALKLVTITICTARPGMIIGKAGQEVDKLKEELKR--- 92
Query: 280 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 459
I ++ V++ ++ L A AE++ +L G +A RRA + M GA G ++ V
Sbjct: 93 ITKKDVQINIYEIRKPELDAAIVAENIARQLEGKIAYRRAVKMAIASAMRMGAEGIKIQV 152
Query: 460 SGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 609
SG+L G + A+S F +G +H+ DY A L + G+LGIKV I
Sbjct: 153 SGRLNGAEMARSEMFKEGRTPLHTLRADIDY---ALAEALTKVGLLGIKVWI 201
>UniRef50_Q6KI49 Cluster: 30S ribosomal protein S3; n=9;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
mobile
Length = 225
Score = 55.6 bits (128), Expect = 1e-06
Identities = 40/141 (28%), Positives = 67/141 (47%), Gaps = 2/141 (1%)
Frame = +1
Query: 187 IIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 366
+++ + + ++LG+ G I +LT +QK E + + + L AI AE +
Sbjct: 67 VLVHSAKPGAILGQNGENINKLTQDIQKLLRNKELKLNIEVVNIKNPDLNAIILAEQIAI 126
Query: 367 KLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDGLM-IHSGDPCN 540
KL R A +R M+SGA+G + VSG+L G A+S + +G M +H+
Sbjct: 127 KLENRAPFRVAQKFAIRNAMKSGAKGIKTQVSGRLNGVDMARSEGYSEGEMKLHTLRQDV 186
Query: 541 DYVNTATRHVLLRQGVLGIKV 603
D+ R G +G+KV
Sbjct: 187 DFAMATAR---TTYGAIGVKV 204
>UniRef50_Q12GW5 Cluster: 30S ribosomal protein S3; n=197;
Bacteria|Rep: 30S ribosomal protein S3 - Polaromonas sp.
(strain JS666 / ATCC BAA-500)
Length = 301
Score = 55.2 bits (127), Expect = 2e-06
Identities = 56/219 (25%), Positives = 95/219 (43%), Gaps = 3/219 (1%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ E+L +L S V + + I I + R V+G+KG I L + ++ +
Sbjct: 38 KVREYLKAKLKNAAVSRVLIERPAKNARITIFSARPGVVIGKKGEDIENLKKELSRQLGV 97
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
P V + E+V + A A+S+ +L + RRA ++ M GA G +++ S
Sbjct: 98 P---VAVNIEEVRKPEIDAKLIADSITQQLEKRIMFRRAMKRAMQNAMRLGALGIKIMSS 154
Query: 463 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGK 636
G+L G + A+ + +G + +H+ DY T GV+G+KV W +G
Sbjct: 155 GRLNGIEIARCEWYREGRVPLHTLRADIDY---GTSEAKTTYGVIGVKV-----WVYKGD 206
Query: 637 NGPKKPQPDHILVTEPKDEP-VPLEPTXEVRSLAPAPLP 750
+ P L P DE P P + R + P P
Sbjct: 207 TLGRGESPGAKLDAAPSDEERKPRGPRRDARPGSDRPAP 245
>UniRef50_A6EHQ8 Cluster: 30S ribosomal protein S3; n=1; Pedobacter
sp. BAL39|Rep: 30S ribosomal protein S3 - Pedobacter sp.
BAL39
Length = 281
Score = 54.4 bits (125), Expect = 3e-06
Identities = 41/171 (23%), Positives = 86/171 (50%), Gaps = 2/171 (1%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ ++L+ +A+ G + V + T R + I R V+G+ G+ + ++ ++K +
Sbjct: 37 KIRKYLSARIAKGGVAKVVIERTLKRITVTIHTARPGIVIGKAGQEVDKIKEELKK---L 93
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
++ +++ ++ L A AE + +L ++ RRA + M GA G +++ S
Sbjct: 94 TKKEIQINIFEIKRPELDAQLVAEGVAKQLEARISFRRAMKSTIAATMRMGAEGIKIMTS 153
Query: 463 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 609
G+L G + A+S ++ +G + +H+ DY A L G +G+KV I
Sbjct: 154 GRLGGAEMARSEQYKEGRIPLHTFRADIDY---ALAEALTTYGKIGVKVWI 201
>UniRef50_A5B260 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 414
Score = 53.2 bits (122), Expect = 7e-06
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +1
Query: 127 ELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 267
++ EDGYS ++V+VT + EIII AT+TQ+ L E GR++RELT V +
Sbjct: 238 DIPEDGYSDIKVKVTGMCMEIIIRATQTQNALIENGRKMRELTLVTR 284
>UniRef50_A1KB21 Cluster: 30S ribosomal protein S3; n=67; cellular
organisms|Rep: 30S ribosomal protein S3 - Azoarcus sp.
(strain BH72)
Length = 260
Score = 50.4 bits (115), Expect = 5e-05
Identities = 50/197 (25%), Positives = 92/197 (46%), Gaps = 2/197 (1%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ ++L + LA V + + + + + R V+G+KG I L +QK +
Sbjct: 38 KVRDYLKKRLAHASVGRVVIERPAKNARVTLFSARPGVVIGKKGEDIEALKRDLQKIVGV 97
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
P V + E+V + A A+S+ +L + RRA ++ M GA+G +++ S
Sbjct: 98 P---VHVNIEEVRKPEIDAKLIADSIAQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSS 154
Query: 463 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGK 636
G+L G + A++ + +G + +H+ DY GV+GIKV W +G+
Sbjct: 155 GRLNGAEIARTEWYREGRVPLHTLRANIDY---GVSEAQTTYGVIGIKV-----WVFKGE 206
Query: 637 NGPKKPQPDHILVTEPK 687
+ QP +V EP+
Sbjct: 207 MLGRNEQP---VVAEPE 220
>UniRef50_O83225 Cluster: 30S ribosomal protein S3; n=1; Treponema
pallidum|Rep: 30S ribosomal protein S3 - Treponema
pallidum
Length = 247
Score = 49.6 bits (113), Expect = 8e-05
Identities = 41/152 (26%), Positives = 77/152 (50%), Gaps = 2/152 (1%)
Frame = +1
Query: 154 VEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGL 333
VE+ P R +++ R V+G KG I ++ + VQKR N + V++ +++ L
Sbjct: 57 VEIVRHPQRVTVVMHTARPGVVIGAKGVNIEKIGAEVQKRLN---KKVQIKVKEIKRMEL 113
Query: 334 CAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG 510
A A+++ +L ++ R+ M+SGA+G ++ VSG+L G + +++ + +G
Sbjct: 114 NAYLVAQNVARQLTARVSFRKCLRQACAGTMKSGAQGVKIRVSGRLGGAEMSRTEEIKEG 173
Query: 511 -LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 603
+H+ DY A H G +G+KV
Sbjct: 174 RTPLHTLRADIDY-GFAEAHT--TYGSIGVKV 202
>UniRef50_Q7UN14 Cluster: 30S ribosomal protein S3; n=3;
Planctomycetaceae|Rep: 30S ribosomal protein S3 -
Rhodopirellula baltica
Length = 236
Score = 48.4 bits (110), Expect = 2e-04
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 6/186 (3%)
Frame = +1
Query: 103 ELNEFLTRELAEDGY--SGVE-VRVTPIRSEIIIM--ATRTQSVLGEKGRRIRELTSVVQ 267
++ EF+T+ + Y +G++ + + R E+ +M R ++G+KG+ I L + +Q
Sbjct: 38 KIREFITKHPKKSQYKSAGIDRIEIERTRDEVRVMLYVARPGLIIGKKGQEIEILQAELQ 97
Query: 268 KRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGC 447
N+ + + L E+V L A AE + +L + RR +L M++GA+G
Sbjct: 98 ---NLVGRRINLKVEEVGRPELQAQLVAEDISQQLAKRSSFRRTMKRMLEQTMDAGAKGI 154
Query: 448 EVVVSGKLRG-QRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWD 624
++ ++G+L G + A+ K G + S ++ + QG +GI+V W
Sbjct: 155 KIQMAGRLGGAEMARREKQSAGSIPLS--TLQAKIDYGFTEAMTPQGHIGIQV-----WI 207
Query: 625 QQGKNG 642
QG G
Sbjct: 208 NQGTYG 213
>UniRef50_P46772 Cluster: 30S ribosomal protein S3; n=5;
Thermotogaceae|Rep: 30S ribosomal protein S3 -
Thermotoga maritima
Length = 209
Score = 48.0 bits (109), Expect = 2e-04
Identities = 47/172 (27%), Positives = 81/172 (47%), Gaps = 3/172 (1%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN 279
E+ + + + G S + V R R I + R ++G KG I L ++++FN
Sbjct: 37 EIRKIIKNKYYHAGISEIYVERPDAERINITVKTARPGIIIGRKGSEITSLREELERKFN 96
Query: 280 IPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVV 459
+ V + E++ T L A AES+ ++ + + A + M GA+G +V+V
Sbjct: 97 ---RRVVINIEEIKTPELDAQLVAESIASRIEKRASYKVAMKRAIMNAMRKGAQGIKVMV 153
Query: 460 SGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 609
+G+L G + A+ ++ G L + DY TAT + G +GIKV I
Sbjct: 154 AGRLGGAEIARREWYLRGRLPLQKIKAIIDY-GTAT--AWTKYGTIGIKVWI 202
>UniRef50_Q8KAH8 Cluster: 30S ribosomal protein S3; n=10;
Chlorobiaceae|Rep: 30S ribosomal protein S3 - Chlorobium
tepidum
Length = 253
Score = 48.0 bits (109), Expect = 2e-04
Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Frame = +1
Query: 142 GYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVA 321
G + + + T +I I A R +++G KG I L+ Q+ I + V++ +V
Sbjct: 53 GIAKIVIERTTKHIKINIYAARPGAIVGHKGEEINNLS---QELTRITGKEVKIDVIEVI 109
Query: 322 TRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMK 498
+ A E++ Y+L ++ RRA ++ M +GA G + +G+L G + A++ +
Sbjct: 110 KPEIEAQLIGENIAYQLENRVSFRRAMKMAIQQAMRAGAEGVRIRCAGRLGGAEIARAEQ 169
Query: 499 FVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 603
+ +G + +H+ DY + T H + G +GIKV
Sbjct: 170 YKEGKIPLHTLRANVDYA-SVTAHTI--AGAIGIKV 202
>UniRef50_A6R2L3 Cluster: Predicted protein; n=1; Ajellomyces
capsulatus NAm1|Rep: Predicted protein - Ajellomyces
capsulatus NAm1
Length = 151
Score = 46.4 bits (105), Expect = 8e-04
Identities = 22/31 (70%), Positives = 25/31 (80%)
Frame = +1
Query: 100 AELNEFLTRELAEDGYSGVEVRVTPIRSEII 192
A LN F RELAE+GYSGVEVRVTP ++II
Sbjct: 99 AGLNGFFLRELAEEGYSGVEVRVTPTGTDII 129
>UniRef50_UPI00015BD7E8 Cluster: UPI00015BD7E8 related cluster; n=1;
unknown|Rep: UPI00015BD7E8 UniRef100 entry - unknown
Length = 231
Score = 45.2 bits (102), Expect = 0.002
Identities = 40/170 (23%), Positives = 85/170 (50%), Gaps = 2/170 (1%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
+ +++ G S V + + + + I++++ ++G KG + +L + +++ +
Sbjct: 39 IRKYIKERYKSAGISKVTIERSGEKIRVRILSSKPGIIIGRKGAEVDQLKNDLERI--VK 96
Query: 286 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 465
+ + L ++V L A AE + ++ ++ RRA + ++SGA+G +V V G
Sbjct: 97 NKDISLSVDEVRVPQLDAQLVAEDIALQIERRVSHRRAMKRAIDNAIKSGAKGIKVQVKG 156
Query: 466 KLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 609
++ G A++ F+ G M + + DY AT + + G+LGIKV I
Sbjct: 157 RIGGADLARAEWFLVGRMPLQTLRADIDY-GYATAYT--KYGILGIKVWI 203
>UniRef50_Q6A6N2 Cluster: 30S ribosomal protein S3; n=27;
Bacteria|Rep: 30S ribosomal protein S3 -
Propionibacterium acnes
Length = 269
Score = 44.4 bits (100), Expect = 0.003
Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ E+L + L G S +E+ R I + A R V+G G + ++K +
Sbjct: 37 KIREWLHKNLERAGLSSIEIERRSERVTIFLYAARPGIVIGRNGAEAERVRGELEK---L 93
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
+ ++L +V + A A+ + +L +A RRA + M +GA G + S
Sbjct: 94 TGKQIQLNILEVKSPETDAQLVAQGIAEQLAARVAFRRAMRKAQQSAMNAGALGIRIKCS 153
Query: 463 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 609
G+L G + ++S + +G + +H+ DY R G +G+KV I
Sbjct: 154 GRLGGAEMSRSEGYREGRVPLHTLRADIDYGFFEARTTF---GRIGVKVWI 201
>UniRef50_P0A4C3 Cluster: 30S ribosomal protein S3; n=39;
Bacteria|Rep: 30S ribosomal protein S3 - Streptococcus
pneumoniae
Length = 217
Score = 44.0 bits (99), Expect = 0.004
Identities = 41/170 (24%), Positives = 79/170 (46%), Gaps = 2/170 (1%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIP 285
+ +F+ +ELA+ S +E+ + + + + V+G+ G + L + + K +
Sbjct: 38 IRKFVQKELADAAVSTIEIERAVNKVNVSLHTAKPGMVIGKGGANVDALRAKLNK---LT 94
Query: 286 EQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSG 465
+ V + ++ L A E + +L +A RRA ++ M +GA+G + VSG
Sbjct: 95 GKQVHINIIEIKQPDLDAHLVGEGIARQLEQRVAFRRAQKQAIQRAMRAGAKGIKTQVSG 154
Query: 466 KLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 609
+L G A++ + +G + +H+ DY A G LG+KV I
Sbjct: 155 RLNGADIARAEGYSEGTVPLHTLRADIDY---AWEEADTTYGKLGVKVWI 201
>UniRef50_Q3ZZL8 Cluster: 30S ribosomal protein S3; n=18;
Bacteria|Rep: 30S ribosomal protein S3 - Dehalococcoides
sp. (strain CBDB1)
Length = 278
Score = 44.0 bits (99), Expect = 0.004
Identities = 50/220 (22%), Positives = 99/220 (45%), Gaps = 6/220 (2%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
+L + ++++ + S V++ + + + R V+G G+R+ E+ ++ ++
Sbjct: 38 KLRKAISKKYVDAAISQVDIERQSNKVTVSVRTARPGIVIGRGGQRVDEMRHFLE---DL 94
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
+ V+L +++ L A A S+ ++ +A RRA + M++GA+G ++ S
Sbjct: 95 IGKKVQLNIVEISQAELDAFLVARSVAEQIERRVAYRRAMKQAIFRSMQAGAKGIKICAS 154
Query: 463 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGK 636
G+L G + A+ +G + +H+ DY T L G +GIKV W +G
Sbjct: 155 GRLGGVEIARREVMHEGRVPLHTLRADIDYGCTRAHTAL---GDVGIKV-----WVYRGD 206
Query: 637 NGPKKPQPDHILVTE----PKDEPVPLEPTXEVRSLAPAP 744
P+ + VTE D P + +V +A P
Sbjct: 207 ILPEAKEKSESEVTEMAAVMADAPAAVVTETKVADIAAKP 246
>UniRef50_P56798 Cluster: Chloroplast 30S ribosomal protein S3;
n=78; Streptophyta|Rep: Chloroplast 30S ribosomal
protein S3 - Arabidopsis thaliana (Mouse-ear cress)
Length = 218
Score = 43.6 bits (98), Expect = 0.005
Identities = 34/161 (21%), Positives = 79/161 (49%), Gaps = 2/161 (1%)
Frame = +1
Query: 139 DGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKV 318
+G + +E++ +III + ++ +K RR+ EL VQK N + + + ++
Sbjct: 58 EGIARIEIQKRIDLIQIIIYMGFPKLLIEDKPRRVEELQMNVQKELNCVNRKLNIAITRI 117
Query: 319 ATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMK 498
+ AE + +L ++ R+A + ++ +G +V ++G++ G+ ++
Sbjct: 118 SNPYGDPNILAEFIAGQLKNRVSFRKAMKKAIELTEQANTKGIQVQIAGRIDGKEIARVE 177
Query: 499 FV-DG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIML 615
++ +G + + + + DY + R + GVLGIK+ I +
Sbjct: 178 WIREGRVPLQTIEAKIDYCSYTVRTI---YGVLGIKIWIFV 215
>UniRef50_A6NXD5 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 283
Score = 43.2 bits (97), Expect = 0.007
Identities = 36/137 (26%), Positives = 62/137 (45%), Gaps = 1/137 (0%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ +FL + G +E+ + I + R V+G+ G I L ++K
Sbjct: 38 KIRDFLKKTQYGAGIPKIEIERDNAKVRIYLHCARPGVVIGKGGEAIEALRLQLEKMLG- 96
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
+SV L +V + A AE++ +L + RRA + M GARG + VS
Sbjct: 97 --KSVALNIVEVKNPDMDAQLIAENIAQQLEKRIGFRRAMKNAMGRAMRMGARGIKTQVS 154
Query: 463 GKLRG-QRAKSMKFVDG 510
G+L G + A++ + DG
Sbjct: 155 GRLGGAEIARTEHYHDG 171
>UniRef50_P46247 Cluster: 30S ribosomal protein S3; n=3;
Entomoplasmatales|Rep: 30S ribosomal protein S3 -
Mesoplasma florum (Acholeplasma florum)
Length = 241
Score = 43.2 bits (97), Expect = 0.007
Identities = 30/137 (21%), Positives = 64/137 (46%), Gaps = 1/137 (0%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ E + + L + S +++ T +II R VLG++G+ + + + VQK
Sbjct: 38 KIREGVLKLLKDAAVSKIKIERTNSNITLIIRTARPAIVLGQEGKNVSNIATAVQKIAKD 97
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
VE+ +V A A + ++ + R +R +++G +G + VS
Sbjct: 98 RNLKVEVKVIEVKNPDADATLVARWIGEQITNRASFRTVQKLAIRKALKAGVKGIKTSVS 157
Query: 463 GKLRG-QRAKSMKFVDG 510
G+L G + A++ +++G
Sbjct: 158 GRLGGVEMARTEGYIEG 174
>UniRef50_Q2JFH0 Cluster: 30S ribosomal protein S3; n=94;
Bacteria|Rep: 30S ribosomal protein S3 - Frankia sp.
(strain CcI3)
Length = 315
Score = 42.7 bits (96), Expect = 0.009
Identities = 31/133 (23%), Positives = 61/133 (45%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ + ++R + G S V++ T R + I R V+G +G + ++K +
Sbjct: 37 KIRKMMSRGMERAGISRVDIERTQGRLRVDIHTARPGIVIGRRGAEADRIRGDLEK---L 93
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
+ V+L +V + A A+ + +L ++ RRA ++ M+ GA+G V S
Sbjct: 94 TGKQVQLNILEVKNPEVDAQLVAQGVAEQLSSRVSFRRAMRKAMQTAMKGGAKGIRVQCS 153
Query: 463 GKLRGQRAKSMKF 501
G+L G +F
Sbjct: 154 GRLGGAEMSRSEF 166
>UniRef50_Q9PQQ4 Cluster: 30S ribosomal protein S3; n=1; Ureaplasma
parvum|Rep: 30S ribosomal protein S3 - Ureaplasma parvum
(Ureaplasma urealyticum biotype 1)
Length = 257
Score = 42.3 bits (95), Expect = 0.012
Identities = 38/171 (22%), Positives = 80/171 (46%), Gaps = 2/171 (1%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ ++L+ + G VE+ R + + A ++ ++G + + + + K
Sbjct: 39 KIRKYLSTKYKNAGIDHVEIERDQQRVNVYVYAVQSGLLIGTEASEKKLIELAINKIVG- 97
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
+Q V L +V L A A + + ++ R A V++ ++++GARG + VS
Sbjct: 98 RKQLVSLKVVEVQIPELQASLMAREIADAIENRVSFRIAQKMVIKKVLKAGARGIKTHVS 157
Query: 463 GKLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 609
G+L G + A+ + G+M +H+ DY + + G++G+KV I
Sbjct: 158 GRLGGVEMAREEGYTQGVMTLHTLRADIDY---SMQEAHTTYGIIGVKVWI 205
>UniRef50_Q04G79 Cluster: 30S ribosomal protein S3; n=1; Oenococcus
oeni PSU-1|Rep: 30S ribosomal protein S3 - Oenococcus
oeni (strain BAA-331 / PSU-1)
Length = 267
Score = 42.3 bits (95), Expect = 0.012
Identities = 40/174 (22%), Positives = 75/174 (43%), Gaps = 6/174 (3%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEV-RVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQK---R 273
+ ++L L + + + R P R + I + V+G G + L S + K
Sbjct: 39 IRKYLETNLKDAAVDRITIERTEPTRINLTIHTAKPGIVIGRGGADVERLRSELSKIVDT 98
Query: 274 FNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEV 453
+ + V + ++ L A + + L +A RRA G ++ + +GA+G
Sbjct: 99 YKGQHKRVNINIVEIRKPDLNAHLVGQQIAADLERRVAFRRAMRGAIQRVQRAGAKGVRT 158
Query: 454 VVSGKLRG-QRAKSMKFVDGLM-IHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 609
+VSG+L G A+ ++ +G + +H+ DY + + G LGIK I
Sbjct: 159 MVSGRLNGADIARKEQYTEGTVPLHTLRADIDY---SWDEAMTSYGNLGIKTWI 209
>UniRef50_Q2GED3 Cluster: 30S ribosomal protein S3; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S3 - Neorickettsia sennetsu (strain Miyayama)
Length = 211
Score = 41.1 bits (92), Expect = 0.028
Identities = 42/172 (24%), Positives = 80/172 (46%), Gaps = 4/172 (2%)
Frame = +1
Query: 106 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFN-I 282
+ +++ A G S V ++ +I + + ++G+KG + + K+F +
Sbjct: 39 VTKYVESSFAHIGISKVIIKRKGASCDITLHCMKPGLIIGKKGADLESFRLKLNKKFGFV 98
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIM-ESGARGCEVVV 459
P +V +V A+ A+S+ ++L + RR + +M ES +G +V
Sbjct: 99 PSLNV----VEVKKPNSSAVLVAKSIAFQLEKRSSFRRVIKKAIATVMRESDVKGVKVAC 154
Query: 460 SGKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKI 609
SG+L G + A++ F +G + +H+ DY A H GV+G+KV I
Sbjct: 155 SGRLSGAEIARTEVFKEGSIPLHTMRADIDYW-VAEAHT--TYGVIGVKVWI 203
>UniRef50_Q9XD30 Cluster: 30S ribosomal protein S3; n=4;
Leptospira|Rep: 30S ribosomal protein S3 - Leptospira
interrogans
Length = 225
Score = 38.7 bits (86), Expect = 0.15
Identities = 27/125 (21%), Positives = 53/125 (42%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ +F+ G V + P + + + + V+G+KG I + +++ +
Sbjct: 37 KIRKFVQNRFNNAGVVKVVIERFPEKINVNLHTAKPGIVIGQKGANIEAVKKILKTMTDK 96
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
P + +K T C AES+ ++ RR LR M G G ++++S
Sbjct: 97 PVNLNIIEVKKPETVAQCI---AESIALQIEQRQPFRRVMKQELRRAMRGGVEGIKILIS 153
Query: 463 GKLRG 477
G+L G
Sbjct: 154 GRLNG 158
>UniRef50_Q11HQ8 Cluster: 30S ribosomal protein S3; n=167; cellular
organisms|Rep: 30S ribosomal protein S3 - Mesorhizobium
sp. (strain BNC1)
Length = 235
Score = 38.3 bits (85), Expect = 0.20
Identities = 40/169 (23%), Positives = 74/169 (43%), Gaps = 2/169 (1%)
Frame = +1
Query: 103 ELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNI 282
++ ++ EL + S V + + + I + R ++G+KG I +L + + N
Sbjct: 38 KIRTYIENELKQAAISKVVIERPHKKCRVTIHSARPGLIIGKKGADIEKLRRKITQMTNA 97
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVS 462
L +V + A A+S+ +L +A RRA ++ M GA G + +
Sbjct: 98 ---ETHLNIVEVRKPEIDARLIAQSIAQQLERRVAFRRAMKRAVQSAMRLGAEGIRINCT 154
Query: 463 GKLRG-QRAKSMKFVDG-LMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 603
G+L G + A+ + +G + +H+ DY T GV G+KV
Sbjct: 155 GRLGGAEIARIEWYREGRVPLHTLRADIDY---GTAEAKTAYGVCGVKV 200
>UniRef50_Q20F10 Cluster: Chloroplast 30S ribosomal protein S3; n=2;
Chlorophyta|Rep: Chloroplast 30S ribosomal protein S3 -
Oltmannsiellopsis viridis (Marine flagellate)
Length = 235
Score = 38.3 bits (85), Expect = 0.20
Identities = 42/161 (26%), Positives = 68/161 (42%), Gaps = 11/161 (6%)
Frame = +1
Query: 154 VEVRVTPIRSEIIIMATRTQSVLGEKGR---RIRELTSVVQKRFN--------IPEQSVE 300
++ +V + E+ I TR ++G K + ++++L +Q N P V
Sbjct: 57 IQRKVDRTQVEVEIRTTRPGLLVGRKRQNCDKLKQLRDELQVELNKFRAKNGVSPTAKVA 116
Query: 301 LYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQ 480
L V + AI AE L +L +A RRA VL I +G ++ VSG+L G
Sbjct: 117 LQVTTVQNKSSEAIVIAEFLVNQLERRIAFRRALRRVLSIIQRDRVQGAKIQVSGRLNGA 176
Query: 481 RAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 603
+++ + D V+ R G+LGIKV
Sbjct: 177 EIARSEWIRTGRVPLQTLRAD-VDYCHREAKTIYGILGIKV 216
>UniRef50_A7R9B1 Cluster: Chromosome undetermined scaffold_3592,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_3592, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 207
Score = 36.3 bits (80), Expect = 0.81
Identities = 32/146 (21%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Frame = +1
Query: 184 EIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLR 363
++II + ++ K RRI EL VQK N + + + ++ AE +
Sbjct: 62 QVIIYMGFPKLLVEGKPRRIEELQMNVQKELNYVNRKLNIAITRITKPYGHPNILAEFIA 121
Query: 364 YKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFV-DG-LMIHSGDPC 537
+L ++ R+A + ++ +G +V ++G++ G+ ++++ +G + + +
Sbjct: 122 GQLRNRVSFRKAIKKAIELTEQADTKGIQVQIAGRIDGKEIARVEWIREGRVPLQTIRAK 181
Query: 538 NDYVNTATRHVLLRQGVLGIKVKIML 615
DY + R + GVLGIK+ I +
Sbjct: 182 IDYCSYRVRTI---YGVLGIKIWIFV 204
>UniRef50_A5AUQ8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 617
Score = 36.3 bits (80), Expect = 0.81
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Frame = +1
Query: 190 IIMATRTQSVLGEK-GRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRY 366
+I TRT S+ + ++IREL SV Q +I + + A A RGL A+ ES+R
Sbjct: 101 VIRQTRTLSMTSAQFPKKIRELQSVTQSYVSIDATTKDKAAALAAARGLGRNAKIESVRL 160
Query: 367 KLIGGLAVRRACYGVLRFIMESGARG 444
++ L + +C G+ M + + G
Sbjct: 161 PMLTVLKL-HSCEGITSASMAAISHG 185
>UniRef50_Q6YR15 Cluster: 30S ribosomal protein S3; n=163;
Firmicutes|Rep: 30S ribosomal protein S3 - Onion yellows
phytoplasma
Length = 252
Score = 36.3 bits (80), Expect = 0.81
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 2/146 (1%)
Frame = +1
Query: 178 RSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAES 357
R I + + ++G+ G +L V K + ++ V L +V A+ A++
Sbjct: 67 RITISVHTAKPGVIIGKDGDTRNKL---VAKLKELTQKDVNLNVLEVKNSDKIALLIAQN 123
Query: 358 LRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAKSMKFVDG-LMIHSGD 531
+ +L + RR ++ +++GA+G + ++SG+L G + A+S +G + +H+
Sbjct: 124 MAEQLENRMFFRRVQKMAIQKALKAGAKGVKTLISGRLGGAEIARSEGHAEGRVPLHTLR 183
Query: 532 PCNDYVNTATRHVLLRQGVLGIKVKI 609
DY A GVLGIKV I
Sbjct: 184 ADIDY---AAVEAHTTYGVLGIKVWI 206
>UniRef50_A6GSD9 Cluster: TonB, C-terminal; n=1; Limnobacter sp.
MED105|Rep: TonB, C-terminal - Limnobacter sp. MED105
Length = 236
Score = 35.9 bits (79), Expect = 1.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = +1
Query: 643 PKKPQPDHILVTEPKDEPVPLEPTXEVRSLAPAPLP 750
P KP+P + EPK P P+ VR +AP P+P
Sbjct: 81 PPKPEPKPVPKPEPKPTPKPVAKPEPVREVAPEPVP 116
>UniRef50_Q9U982 Cluster: Drosophila dodeca-satellite protein 1;
n=9; Endopterygota|Rep: Drosophila dodeca-satellite
protein 1 - Drosophila melanogaster (Fruit fly)
Length = 1301
Score = 34.7 bits (76), Expect = 2.5
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +1
Query: 169 TPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLC-AIA 345
T ++ + + +LG+ G+R+RE+ V R NIP QS E +E + G IA
Sbjct: 167 TQASRQVTVPREHFRVILGKGGQRLREIERVTATRINIPSQSDE--SEFITIAGTKEGIA 224
Query: 346 QAE 354
QAE
Sbjct: 225 QAE 227
>UniRef50_Q9XDW7 Cluster: PsbAa; n=1; Rhodopseudomonas
palustris|Rep: PsbAa - Rhodopseudomonas palustris
Length = 403
Score = 29.1 bits (62), Expect(2) = 2.9
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Frame = +1
Query: 283 PEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGA--RGCEVV 456
P + L KVA L I A +LR +LI G V GV+ + + A RGCEV
Sbjct: 114 PRRLAALEGTKVAVHYLRGIDDALTLRPQLIEGHRVALVGGGVIGLEVAAAALSRGCEVT 173
Query: 457 V 459
+
Sbjct: 174 I 174
Score = 24.2 bits (50), Expect(2) = 2.9
Identities = 12/55 (21%), Positives = 26/55 (47%)
Frame = +1
Query: 439 RGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKV 603
RG ++ +L GQ+ S+ DG ++ + + + L+ G+ G++V
Sbjct: 201 RGAAILCKAELSGQQTHSLTLADGRVVDADVIVVGIGSEPAGELALQIGLAGVQV 255
>UniRef50_UPI0000DA2268 Cluster: PREDICTED: hypothetical protein;
n=2; Rattus norvegicus|Rep: PREDICTED: hypothetical
protein - Rattus norvegicus
Length = 328
Score = 34.3 bits (75), Expect = 3.3
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = +3
Query: 345 PGRISKIQAYRRSRCTSCLLWCSPFHH 425
PGR +A RRSRC+ C W HH
Sbjct: 240 PGRDWSAEASRRSRCSRCCTWSGDIHH 266
>UniRef50_Q5U794 Cluster: Signal recognition particle GTPase; n=1;
Azospirillum lipoferum|Rep: Signal recognition particle
GTPase - Azospirillum lipoferum
Length = 276
Score = 33.9 bits (74), Expect = 4.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +1
Query: 616 PWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTXEVRSLAPAPLP 750
P Q+ P +P+P+ V EP P +EP ++PAP+P
Sbjct: 25 PVSQESAPPPPEPEPEVEPVPEPAPAPPSVEPPLSPAQVSPAPVP 69
>UniRef50_Q8EUC1 Cluster: 30S ribosomal protein S3; n=7;
Mycoplasma|Rep: 30S ribosomal protein S3 - Mycoplasma
penetrans
Length = 417
Score = 33.9 bits (74), Expect = 4.3
Identities = 44/207 (21%), Positives = 91/207 (43%), Gaps = 6/207 (2%)
Frame = +1
Query: 148 SGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIR----ELTSVVQKRFNIPEQSVELYAEK 315
S VE+ T + +I I ++ VLG++ ++ +L+ +V ++ + + L
Sbjct: 54 SHVEIERTQNKVDIFIHCSQPGIVLGKEMSNLKVLKQQLSYIVGRKTKVNVNVLPLDKPT 113
Query: 316 VATRGLCA-IAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLRG-QRAK 489
+ R + IA A R+ R A ++ ++ SGA+G + VSG+L G + A+
Sbjct: 114 FSARIIAREIADAIENRFSF------RNAQKIAIKKVLASGAKGIKTNVSGRLGGVEMAR 167
Query: 490 SMKFVDGLMIHSGDPCNDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHI 669
+ +G++ + N ++ A G++G+KV W +G+ K +
Sbjct: 168 EEGYSEGIVPLTTLRAN--IDYALEEAWTTYGLIGVKV-----WINRGELFKKNFSQNTK 220
Query: 670 LVTEPKDEPVPLEPTXEVRSLAPAPLP 750
+P ++ +P + + P P P
Sbjct: 221 FEKKPIEKKREQQPVQQQKPQQPKPQP 247
>UniRef50_Q39682 Cluster: Glycine-rich protein; n=1; Daucus
carota|Rep: Glycine-rich protein - Daucus carota
(Carrot)
Length = 111
Score = 33.1 bits (72), Expect = 7.5
Identities = 13/35 (37%), Positives = 14/35 (40%)
Frame = +3
Query: 405 WCSPFHHGIWCPWL*SCCIWQAAWSTCQINEVCRW 509
W P G WC W C IW S C+ RW
Sbjct: 32 WWIPPRRGRWCWWRCRCWIWSRLRSWCRSRRRIRW 66
>UniRef50_A0DWV1 Cluster: Chromosome undetermined scaffold_67, whole
genome shotgun sequence; n=2; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_67,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 331
Score = 33.1 bits (72), Expect = 7.5
Identities = 16/54 (29%), Positives = 26/54 (48%)
Frame = +1
Query: 589 LGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEPTXEVRSLAPAPLP 750
LG++ K L K GP + QP V +P +P P++P +++ P P
Sbjct: 59 LGLQEKDFLVVMVNVKKGPPQQQPVQQQVQQPPQQPQPVQPQQPIQAFKPVVAP 112
>UniRef50_O84054 Cluster: Putative uncharacterized protein; n=3;
Chlamydia|Rep: Putative uncharacterized protein -
Chlamydia trachomatis
Length = 520
Score = 32.7 bits (71), Expect = 9.9
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 5/76 (6%)
Frame = +1
Query: 484 AKSMKFVDGLM--IHSGDPCNDYVNTAT---RHVLLRQGVLGIKVKIMLPWDQQGKNGPK 648
A ++K+V G++ I + D + +N+AT + + L Q LGI++ I D +
Sbjct: 167 AATVKYVKGIVDKILNNDKLSTALNSATEVEKKIALAQKALGIEITINPDADTNPDTDQE 226
Query: 649 KPQPDHILVTEPKDEP 696
P P + TE K+ P
Sbjct: 227 TPDPAPVADTEEKESP 242
>UniRef50_Q5SCB4 Cluster: Cyclin H; n=2; Ostreococcus|Rep: Cyclin H
- Ostreococcus tauri
Length = 322
Score = 32.7 bits (71), Expect = 9.9
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Frame = +1
Query: 373 IGGLAVRRACYGVLR----FIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMI 519
+ GL R CYG R F+M+ GC+ S +L R K++ VD LM+
Sbjct: 146 LSGLKFRLVCYGATRPLDGFLMDVEDGGCKGATSKQLIECRKKALDIVDRLML 198
>UniRef50_Q5XIY2 Cluster: Transmembrane protein 56; n=8;
Euteleostomi|Rep: Transmembrane protein 56 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 264
Score = 32.7 bits (71), Expect = 9.9
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 400 CYGVLRFI-MESGARGCEVVVSGKLRGQRAKSMK 498
C +L I M ARGC V++GKL+G++A S K
Sbjct: 222 CLDILNIIWMYKIARGCYKVITGKLKGRKADSKK 255
>UniRef50_P36021 Cluster: Monocarboxylate transporter 8; n=24;
Euteleostomi|Rep: Monocarboxylate transporter 8 - Homo
sapiens (Human)
Length = 539
Score = 32.7 bits (71), Expect = 9.9
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Frame = +1
Query: 616 PW---DQQGKNGPKKPQPDHILVTEPKDEPVPL---EPTXEVRSLA-PAPLP 750
PW DQ+ + P+P+ EP+ EPVP+ EP E + L PAPLP
Sbjct: 14 PWQEADQEQQEPVGSPEPESEPEPEPEPEPVPVPPPEPQPEPQPLPDPAPLP 65
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 759,936,588
Number of Sequences: 1657284
Number of extensions: 15800952
Number of successful extensions: 51898
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 47988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51586
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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