Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_B22
(750 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal prote... 334 4e-92
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr... 30 1.5
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int... 30 1.5
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 2.7
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z31590-7|CAA83463.1| 361|Caenorhabditis elegans Hypothetical pr... 29 3.5
AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical... 28 6.2
>U39851-9|AAF99870.1| 247|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 3 protein.
Length = 247
Score = 334 bits (821), Expect = 4e-92
Identities = 160/224 (71%), Positives = 185/224 (82%), Gaps = 1/224 (0%)
Frame = +1
Query: 43 MAVN-NISXXXXXXXXXXXXAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 219
MA N N++ AELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1 MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60
Query: 220 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 399
LGE+GRRI+ELTSVVQKRF E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRA
Sbjct: 61 LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120
Query: 400 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 579
CYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+ A RHV LR
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180
Query: 580 QGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPVPLEP 711
QGV+GIKVKIMLP+D +G+NGP+ PDH+ + EP++E +P EP
Sbjct: 181 QGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEP 224
>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
F57F4.4 protein.
Length = 2090
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +3
Query: 549 QHCYQTCASQTRSTRNQGQNHVA 617
Q CY CAS T ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
interacting proteinprotein 1 protein.
Length = 2153
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = +3
Query: 549 QHCYQTCASQTRSTRNQGQNHVA 617
Q CY CAS T ST Q QNH A
Sbjct: 1799 QGCYGDCASITISTTIQNQNHTA 1821
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = +1
Query: 208 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 327
+ S+ G+KG+ +REL + + K ++ E++ + AE A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 130 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 291
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +1
Query: 130 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 291
L G G + IR+E+ + ++G+ G+ +REL + IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720
>Z31590-7|CAA83463.1| 361|Caenorhabditis elegans Hypothetical
protein R01H10.6 protein.
Length = 361
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/59 (30%), Positives = 30/59 (50%)
Frame = -1
Query: 543 IITRVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKL 367
++TR + +E+IY L TT+ FTTT H + NTI+S + + + K+
Sbjct: 89 LVTRNRGISNEAIYVLAKVSATTTKFEFI--FTTTNPASHSKLFNTISSISRAYETTKM 145
>AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical
protein F25E5.1 protein.
Length = 1062
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 637 NGPKKPQPDHILVTEPKDEPVPLEPTXEVRSLAPAPLP 750
NGPKK + +L+T P E V E + +P+P P
Sbjct: 998 NGPKKSKNQMMLITFPSREIVEEEEPPQEAEQSPSPDP 1035
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,000,812
Number of Sequences: 27780
Number of extensions: 364801
Number of successful extensions: 1228
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1218
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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