Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_B20
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.48
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 29 0.85
SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit L7|... 28 1.5
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.4
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 27 3.4
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 26 4.5
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 4.5
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po... 26 6.0
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 26 6.0
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy... 26 6.0
>SPBC1709.03 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 29.5 bits (63), Expect = 0.48
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +3
Query: 561 ECCGNTGAINYGQFXLPXSCCVKKSILSTFAGNNCTVDAANPGC 692
+C G+ YGQ C S++S AG N T+ A C
Sbjct: 302 DCSGHGRCSKYGQLDSCYVCQCSNSVVSNAAGQNKTIRWAGESC 345
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 28.7 bits (61), Expect = 0.85
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 290 LHSRRGCNVRDRVLGMLWSDTRESLHGRHVRNLFAGDHH 406
L SRR N + +V WS+ E +H + RNLF + H
Sbjct: 12 LFSRRFPNWKRKVQTDSWSNVPEHIHSKIGRNLFQKEGH 50
>SPBC2F12.02c |mrpl7||mitochondrial ribosomal protein subunit
L7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 287
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -3
Query: 473 IHNALL-DALAVGEEEDADHHLHNDDHQQKD 384
+H+ +L D LA D D L D+H QKD
Sbjct: 56 LHDTILPDVLAASYRHDIDTALSTDEHTQKD 86
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +2
Query: 140 NEFCEICAILLQPGRRAPRPAASGDWXSVPDELDHGQR 253
+E E+ L+P RAPRP+ S S E+ H R
Sbjct: 77 DEKLEVDFAFLEPPERAPRPSISTRSRSQSPEVQHRDR 114
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 26.6 bits (56), Expect = 3.4
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Frame = -3
Query: 431 EDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDD----YEDPRTDSKMG 264
E+ + N + Q+ DDH + SQE HEH D Y + +
Sbjct: 505 EEFEEEKDNVEAQKMGYTNDDHVSQHEHTHENSQEHHHEHNHNHDHIHKYNEKCDHESIS 564
Query: 263 LQ*V-FDHGPVHQERXSNPH 207
LQ + DH H N H
Sbjct: 565 LQNLDNDHHCHHHHENHNMH 584
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/26 (53%), Positives = 14/26 (53%)
Frame = -3
Query: 401 DHQQKDCVRDDHAVTLAYRSTASQER 324
D KD V DD VTL TA QER
Sbjct: 44 DFLTKDVVVDDKLVTLQLWDTAGQER 69
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 26.2 bits (55), Expect = 4.5
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Frame = -1
Query: 478 TPSIMLSLMLSP*VKRRTLITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPT 299
+PS+ LS + + + T++ S K T A P+N T IT+PT
Sbjct: 320 SPSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNS---ISFANTTPENTSTQITSPT 376
Query: 298 TMKIHGP-TARWVFSKS--LTMVQFIRNAXPIPTSS 200
+ P T+ V + S +T + + PI +SS
Sbjct: 377 AVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSS 412
>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 361
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -1
Query: 352 RIAPQHPKNAITNITAPTTMKIHG 281
RI P P N + NIT P+T+ HG
Sbjct: 175 RIFP--PTNLVANITLPSTLHPHG 196
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 6.0
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 6/88 (6%)
Frame = -1
Query: 424 LITTCTMMITSKKIAYVTTMQ*LSRIAPQHPKNAITNITAPTTMKIHGPTAR---WVFSK 254
L C + K +A +T Q LSR+ H KN + P I P++R V+
Sbjct: 95 LFEWCGRRFSVKTVA-MTAKQMLSRVQTIHEKNLVYRDIKPDNFLIGRPSSRNANMVYMV 153
Query: 253 SLTMVQFIRNAXP---IPTSSRPRSAXT 179
M ++ R+ IP S R + T
Sbjct: 154 DFGMAKYYRDPKTKQHIPYSERKSLSGT 181
>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 286
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/25 (36%), Positives = 12/25 (48%)
Frame = -3
Query: 440 GEEEDADHHLHNDDHQQKDCVRDDH 366
G ++ HH H+ DH D DH
Sbjct: 10 GSDDSTHHHTHDYDHHNHDHHGHDH 34
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,259
Number of Sequences: 5004
Number of extensions: 41665
Number of successful extensions: 134
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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