Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_B20
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800     33   0.16 
02_02_0310 - 8842286-8843314                                           31   1.2  
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685...    30   1.5  
03_04_0035 - 16685674-16686376,16686594-16686640                       29   4.7  
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970...    29   4.7  
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    28   6.2  
02_04_0260 - 21350060-21350269,21350544-21350604,21350834-213509...    28   6.2  
01_06_0288 - 28228673-28228744,28228866-28229071,28229316-282295...    28   6.2  
06_03_1269 + 28865236-28865819,28866124-28866754                       28   8.2  

>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
          Length = 863

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 609 PXSCCVKKSILSTFAGNNCTVDAA 680
           P SCCV+K I+S F   NCT D A
Sbjct: 53  PASCCVRKIIVSNFLPLNCTKDEA 76


>02_02_0310 - 8842286-8843314
          Length = 342

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 419 HHLHNDDHQQKDCVRDDHAVTLAYRSTA-SQERDHEHYSPDDYEDPRTDSKM 267
           HH H+D++++ +  + D A     R  +  + R H H+  DD+E     + M
Sbjct: 194 HHHHHDENEEDEHEQADEASPAVERLISFHRRRHHHHHHEDDHEQREEGAPM 245


>10_06_0171 +
           11466934-11466990,11467073-11468312,11468450-11468596,
           11469650-11470140
          Length = 644

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 455 DALAVGEEEDADHHLHNDDHQQKDCVRDDHAV 360
           D   + EE+D DHH H+  H   D    +HA+
Sbjct: 320 DTFRIAEEDDDDHHHHHHYHGDADDDDGEHAM 351


>03_04_0035 - 16685674-16686376,16686594-16686640
          Length = 249

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 464 ALLDALAVGEEEDADHHLHNDDHQQK 387
           ALL  L   E++D DHH H+  H  +
Sbjct: 224 ALLGQLEAEEDDDGDHHHHHHHHHHQ 249


>03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,
            9700145-9700235,9700698-9700759,9701256-9702962,
            9703789-9703870,9703972-9704057,9704855-9704968,
            9705113-9705163,9705261-9705358,9707084-9707546
          Length = 1367

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -3

Query: 455  DALAVGEEEDADHHLHNDDHQQKDCVRDDHAVTLAYRSTASQERDHEHYSPDD 297
            DA   G  E+A  H     H    C RDD  V +     +S+ +D++    DD
Sbjct: 1209 DAKNCGSGEEAGDHDSERTHGTLPCSRDDEPVHVPSDFGSSKSQDNQRDEDDD 1261


>06_03_1283 - 28957729-28959258,28959354-28959550,28959824-28960026,
            28960097-28960424,28960524-28960661,28960765-28961020,
            28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -3

Query: 446  AVGEEEDADHHLH--NDDHQQKDC 381
            ++  EE +DHH H  N++H+ +DC
Sbjct: 969  SISIEESSDHHEHHHNEEHKAEDC 992


>02_04_0260 -
           21350060-21350269,21350544-21350604,21350834-21350901,
           21351274-21351483,21351684-21351724,21351923-21351972,
           21352084-21352172,21352265-21352339,21352539-21352656,
           21352689-21352771,21352854-21352970,21353857-21354074,
           21354184-21354241,21354356-21354508
          Length = 516

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -1

Query: 340 QHPKNAITNITAPTTMKIHGPTARWVFSKSLTMVQFIRNAXPIP 209
           QH +N I        MK H P  +W+    L+  Q I++    P
Sbjct: 187 QHWENKIQASDENGMMKEHSPLGKWIIGMKLSGPQMIKHVQEFP 230


>01_06_0288 -
           28228673-28228744,28228866-28229071,28229316-28229554,
           28229649-28229705,28229787-28229873,28229963-28230507,
           28231574-28231714
          Length = 448

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
 Frame = +2

Query: 410 ASGDQRPPLHLRREH---QGEHYGWRRR 484
           A+  +  PL LRRE    +GE  GWRRR
Sbjct: 3   AAAREEQPLLLRREEGEEEGEEVGWRRR 30


>06_03_1269 + 28865236-28865819,28866124-28866754
          Length = 404

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 299 RRGCNVRDRVLGMLWSDTRESLHGRHVRN 385
           RR C+V D V   +W     ++HGR  R+
Sbjct: 214 RRRCSVFDVVTAAIWQCRTRAIHGRRCRS 242


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,335,580
Number of Sequences: 37544
Number of extensions: 314018
Number of successful extensions: 1042
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)