Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_B20
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    65   7e-13
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.7  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   4.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.5  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 64.9 bits (151), Expect = 7e-13
 Identities = 42/167 (25%), Positives = 63/167 (37%), Gaps = 2/167 (1%)
 Frame = +3

Query: 129 MGCGTSFVKYXXXXXXXXXXXXXXXXXXXXXXXXMNWTMVKDLLKTHLAVGPWIFIVVGA 308
           M CG   +KY                        +    V   ++T LA      IV+G+
Sbjct: 1   MSCGMGMIKYLLFIFNFVFAVCGLGILTLGVLIHLQILGVSKQIETGLAFPSITLIVLGS 60

Query: 309 VMFVIAFLGCCGAIRESHCMVVTYAXXXXXXXXXXXXXXXXXF--TYGESIKESIMDGVG 482
           ++FVI+F GCCGAIRESHCM +T+A                 F     +    +I +   
Sbjct: 61  IIFVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQ 120

Query: 483 VLFKKRSDXXXXXXXXXVXSELQRQFECCGNTGAINYGQFXLPXSCC 623
            +F   +              +Q+  +CCG     +Y    +P SCC
Sbjct: 121 EIF---NGYFLNSESKDFIDFIQKNLQCCGVHSLSDYNDKPIPASCC 164


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +2

Query: 386  LFAGDHHCASGDQRPPLHLRREHQGEHYGWRRR 484
            L+       + DQ+P  +L  +   + YG RR+
Sbjct: 963  LYKSSESSCNPDQKPTEYLLEDSMKQQYGKRRK 995


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -3

Query: 530 LGGLVCVSVRSLFE*HADAIHNALLDALAVGEEEDADHHLHNDDHQQKDCVRDDHAVTLA 351
           L GL  ++ R LF      +H+A  D + VGE+  A   L     + K  + + +    A
Sbjct: 397 LNGLEGLTGRGLFISDIP-LHDATRDVILVGEQARAQDGLRRRMDKLKSSIEEANLAVSA 455

Query: 350 YR 345
            R
Sbjct: 456 ER 457


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -2

Query: 165 IAHISQNSFHIPC*EHYFLFLFHN 94
           I + S +SF+IPC     +FL++N
Sbjct: 344 IIYSSLSSFYIPC--IIMVFLYYN 365


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
 Frame = -3

Query: 419 HHLHNDDHQ-QKDCVRDDH 366
           HHL N  H  Q   V+D H
Sbjct: 142 HHLQNHHHHLQSTAVQDHH 160


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,619
Number of Sequences: 438
Number of extensions: 3077
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)