Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_B19
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    29   0.66 
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    29   0.66 
SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase |Schi...    28   2.0  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    27   2.7  
SPAC3C7.07c |||arginine-tRNA protein transferase |Schizosaccharo...    27   2.7  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    26   8.1  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 13/53 (24%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = +2

Query: 431  KEGDYELDPTLKKDAVEVFDADFEKVN---FDNGAAAAGLINKWVENKTNERI 580
            K+G   L+P +  + V  + +++EK++   FD+     GL++ +  N+ N  +
Sbjct: 1277 KDGSGVLEPKIAANTVNQYPSEWEKIDLKVFDDLETTEGLLSSYCSNEWNREV 1329


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 29.5 bits (63), Expect = 0.66
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +2

Query: 407  NVANKIYIKEGDYELDPTLKKDAVEVFDADFEKVN 511
            + ++  Y+K+G +EL  T+  D   V D DF+ V+
Sbjct: 1256 STSDNFYLKQGGFELLDTIITDFSNVMDPDFDDVS 1290


>SPAC4D7.02c |||glycerophosphoryl diester phosphodiesterase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 319

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 778 VALTILEIIFLVHHRNINCRFGVNIE 701
           V LT  E++ ++H RN+N  FGV+++
Sbjct: 75  VRLTKDEVVCILHDRNLNRVFGVDVD 100


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 21/74 (28%), Positives = 34/74 (45%)
 Frame = -3

Query: 354 ERIVSSSGIPRLVNSSSCAGSVVPKVINASKYSADNGDDTTFFFLSSSLQNFAENLVIAE 175
           E +  S    +  +S S  G++    +N+ K+S +    T      S LQNF+E L + +
Sbjct: 500 ELVQQSHSYKKPSDSKSVGGNIFS--VNSKKHSVNINAKTAANNGLSHLQNFSEEL-LKK 556

Query: 174 DKAFESILRXRVLY 133
            K F S+    V Y
Sbjct: 557 RKLFSSLFSNNVSY 570


>SPAC3C7.07c |||arginine-tRNA protein transferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/60 (25%), Positives = 23/60 (38%)
 Frame = +2

Query: 431 KEGDYELDPTLKKDAVEVFDADFEKVNFDNGAAAAGLINKWVENKTNERIKDLLSEDSLD 610
           + G Y   P  K     ++    +  NF         I KWV+    + +K + SE S D
Sbjct: 21  RSGHYLYKPNGKTSCCSLYTIRLDSYNFKIAKEQKKAIKKWVKYVNGKPLKPMKSEISTD 80


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 152 SMDSKALSSAITKFSAKFCNELDKKKNVVS 241
           S DSK+L   +  F++K C E+DKK  +++
Sbjct: 10  SCDSKSLG--VDDFTSKRCREIDKKALLIT 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,450,656
Number of Sequences: 5004
Number of extensions: 69476
Number of successful extensions: 207
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)