Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_B17
(515 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99281-56|CAB16513.1| 131|Caenorhabditis elegans Hypothetical p... 74 5e-14
U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon ge... 32 0.21
AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein. 32 0.21
Z82076-2|CAB04938.1| 360|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical pr... 29 2.0
Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threon... 29 2.0
AF002198-8|AAF99931.2| 300|Caenorhabditis elegans Serpentine re... 27 6.0
>Z99281-56|CAB16513.1| 131|Caenorhabditis elegans Hypothetical
protein Y57G11C.12b protein.
Length = 131
Score = 74.1 bits (174), Expect = 5e-14
Identities = 43/115 (37%), Positives = 62/115 (53%), Gaps = 2/115 (1%)
Frame = +2
Query: 83 KTVKPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQC-REKLKELFIKNKHV 259
+TV P+ S++ AEAR VL+ YK + R P D+ + R +K+ F KN H+
Sbjct: 17 RTVAPIKSNNSAEARMSVLAAYKEFQRLTPKFWWDFGLHDMPLGVFRAVIKKQFTKNGHL 76
Query: 260 TDIRVIDMLVIKGQMELKESVNIWKQKGHIMAY-FKPTEEPKPKNFLSKFFSGNE 421
TD+RV+D LV + +K + H+ Y F E KPK+FLSKF +G E
Sbjct: 77 TDVRVVDRLVGETHQHMKSIRYAFYNPDHVRNYLFAENVEAKPKDFLSKFLNGKE 131
>U10402-9|AAA19065.1| 892|Caenorhabditis elegans Gro-1 operon gene
protein 1 protein.
Length = 892
Score = 32.3 bits (70), Expect = 0.21
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = -2
Query: 340 LLFPYVHRLFQLHLTLNNQHINDSNISHMFVL-NEE----FFQFLSTLCF*LGNVIILHY 176
+LF + L+ L+N H+N S ISH F L N+E + FL TL F L I +
Sbjct: 99 ILFENIRHETSLYFLLSNNHVN-SIISHKFDLQNDEIMAYYISFLKTLSFKLNPATIHFF 157
Query: 175 IGDLT 161
+ T
Sbjct: 158 FNETT 162
>AY052769-1|AAL14108.1| 885|Caenorhabditis elegans GOP-1 protein.
Length = 885
Score = 32.3 bits (70), Expect = 0.21
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Frame = -2
Query: 340 LLFPYVHRLFQLHLTLNNQHINDSNISHMFVL-NEE----FFQFLSTLCF*LGNVIILHY 176
+LF + L+ L+N H+N S ISH F L N+E + FL TL F L I +
Sbjct: 92 ILFENIRHETSLYFLLSNNHVN-SIISHKFDLQNDEIMAYYISFLKTLSFKLNPATIHFF 150
Query: 175 IGDLT 161
+ T
Sbjct: 151 FNETT 155
>Z82076-2|CAB04938.1| 360|Caenorhabditis elegans Hypothetical
protein W07G1.6 protein.
Length = 360
Score = 29.1 bits (62), Expect = 2.0
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = -2
Query: 388 FWFRFFCWFEVGHNVPLLFPYVHRLF---QLHLTLNNQHINDSNISHMFVLNEEFFQFLS 218
F F F WFE + L++PY + L H+ N +D I ++
Sbjct: 67 FSFYFGAWFECWLGLVLVWPYKNGLVLVEDTHMKFTNFETSDRTIM------AHITKYPE 120
Query: 217 TLCF*LGNVIILHYI 173
T C G+ +I HY+
Sbjct: 121 TTCLLFGSFLIWHYL 135
>Z70207-8|CAM33501.1| 835|Caenorhabditis elegans Hypothetical
protein F15A2.6b protein.
Length = 835
Score = 29.1 bits (62), Expect = 2.0
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +2
Query: 71 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 247
KV K V K LS S + R +++ K + P+++ YD+ E K L++
Sbjct: 72 KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122
Query: 248 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 337
+HV+ + D LV KG++ KE+ ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152
>Z70207-5|CAA94127.2| 914|Caenorhabditis elegans Hypothetical
protein F15A2.6a protein.
Length = 914
Score = 29.1 bits (62), Expect = 2.0
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +2
Query: 71 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 247
KV K V K LS S + R +++ K + P+++ YD+ E K L++
Sbjct: 72 KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122
Query: 248 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 337
+HV+ + D LV KG++ KE+ ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152
>AF316542-1|AAG50270.1| 914|Caenorhabditis elegans serine/threonine
kinase SAD-1 protein.
Length = 914
Score = 29.1 bits (62), Expect = 2.0
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Frame = +2
Query: 71 KVGTKTV-KPVLSSSHAEARNRVLSLYKAWYRQIPYIVKDYDIPKSEAQCREKLKELFIK 247
KV K V K LS S + R +++ K + P+++ YD+ E K L++
Sbjct: 72 KVAIKIVNKEKLSESVLQKVEREIAIMKLI--EHPHVLHLYDV-------YENKKYLYLL 122
Query: 248 NKHVTDIRVIDMLVIKGQMELKESVNIWKQ 337
+HV+ + D LV KG++ KE+ ++Q
Sbjct: 123 LEHVSGGELFDYLVRKGRLMSKEARKFFRQ 152
>AF002198-8|AAF99931.2| 300|Caenorhabditis elegans Serpentine
receptor, class bc (class b-like) protein 3 protein.
Length = 300
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 354 AIMCPFCFHMFTDSFNSI*PLITSISMTRISVTCLFL 244
AI P FH + DS+ SI L+ +IS++ ++L
Sbjct: 115 AIYTPIMFHKYRDSYPSIIILMLAISLSMFENLLMYL 151
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,367,525
Number of Sequences: 27780
Number of extensions: 234618
Number of successful extensions: 680
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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