Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_B15
(886 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0189 - 1493618-1493637,1493728-1493795,1494070-1494207,149... 44 2e-04
12_01_0190 - 1404374-1404402,1404491-1404558,1404830-1404967,140... 39 0.006
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 34 0.13
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533... 31 0.93
10_08_0810 + 20734490-20734606,20735182-20735433,20735521-207356... 31 1.2
11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257 29 3.8
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865... 29 5.0
09_04_0271 + 16271569-16271767,16272072-16272206,16272286-162725... 29 6.6
03_02_0178 + 6195402-6199158,6199438-6200003 29 6.6
02_05_1227 - 35076047-35076217,35076737-35076797,35077038-350771... 29 6.6
02_04_0485 + 23338980-23339187,23339277-23339305,23339962-233400... 29 6.6
02_04_0482 + 23291986-23292181,23292289-23292317,23293500-232936... 29 6.6
06_03_1276 - 28907726-28907842,28908012-28908062,28908146-289082... 28 8.7
>11_01_0189 -
1493618-1493637,1493728-1493795,1494070-1494207,
1494647-1494698,1494803-1494902,1495606-1495681,
1495757-1495844,1496248-1496342,1496506-1496605,
1496765-1496879,1497077-1497241,1497362-1497547
Length = 400
Score = 43.6 bits (98), Expect = 2e-04
Identities = 33/121 (27%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Frame = +1
Query: 538 QVPVKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVST---LKCKAQGHVSSLNWRPLSAS 708
++ + ++W+PH +A + + V V+ E L Q V ++ WRP S
Sbjct: 123 EIDTQKVSWNPHKHCLAFVSGKNQVTVHDFEEPDNKESYILTSDHQKDVKAVEWRPNSGK 182
Query: 709 ELAVGCEQGVIVWTVD--PNLMFTK---PSSSNAVLLK------KNGHSPVTDVSWSPNG 855
+AVGC+ G+ +W+ N+ K SSS + + G S ++ V WSP+G
Sbjct: 183 MIAVGCKGGICLWSASYPGNVASVKSGVTSSSFGAFPRGLGMPIRRGLSSISLVQWSPSG 242
Query: 856 D 858
D
Sbjct: 243 D 243
>12_01_0190 -
1404374-1404402,1404491-1404558,1404830-1404967,
1405414-1405465,1405570-1405669,1406938-1407088,
1407212-1407311,1407471-1407585,1407786-1407950,
1408050-1408105,1408199-1408256
Length = 343
Score = 38.7 bits (86), Expect = 0.006
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Frame = +1
Query: 538 QVPVKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVST---LKCKAQGHVSSLNWRPLSAS 708
++ + ++W+PH +A + + V V+ E L Q V ++ WRP S
Sbjct: 99 EIDTQKVSWNPHKHCLAFVSGKNQVTVHDFEEPDNKESYILTSDHQKDVKAVEWRPNSGK 158
Query: 709 ELAVGCEQGVIVWT 750
+AVGC+ G+ +W+
Sbjct: 159 VIAVGCKGGICLWS 172
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 34.3 bits (75), Expect = 0.13
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 556 LAWHPHTTKIAVATVDDNVRVYCSEV-TFVSTLKCKAQGHVSSLNWRPLSASELAVGCEQ 732
L W P +AV + +NV +Y + V TLK + + V SL W P + G ++
Sbjct: 212 LCWSPDGQFLAVPGLRNNVVMYDRDTGEEVFTLKGEHEQPVCSLCWSPNGRYLVTAGLDK 271
Query: 733 GVIVWTV 753
V++W V
Sbjct: 272 QVLIWDV 278
Score = 30.3 bits (65), Expect = 2.1
Identities = 25/111 (22%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = +1
Query: 541 VPVKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWRPLSASELAV 720
+P++ LA++ T +A A DD +++ + +S + +G V+ L++ P + ++
Sbjct: 116 LPIRSLAFNKKGTLLAAAGDDDGIKLIATIDNTISKVLKGHKGSVTGLSFDPRNDYLASI 175
Query: 721 GCEQGVIVWTVDPNLMFTKPSSSNAVL-LKKNGHSPVTDVSWSPNGDLWIV 870
VI W + T+ S + + HS + WSP+G V
Sbjct: 176 DTFGTVIFWDLCTG---TEARSLKRIAPTFGSDHSINNALCWSPDGQFLAV 223
>05_03_0376 -
13252220-13252354,13252433-13252541,13253279-13253337,
13253608-13253700,13254078-13254153,13254405-13254467,
13254535-13254629,13254743-13254845,13254930-13255024,
13255098-13255156,13255445-13255656,13256090-13256222,
13256691-13257081
Length = 540
Score = 31.5 bits (68), Expect = 0.93
Identities = 25/107 (23%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Frame = +1
Query: 484 KDIGPKIVANYSRTRNWGQVPVKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVS----TL 651
+D P++ ++ T + C + + +A ++VD VR++ + + S T+
Sbjct: 254 EDDFPEVKVDFQETFLGHNSSISCCRFSASGSNVASSSVDGTVRIWTYDSSTPSSKNATI 313
Query: 652 KCKAQGHVSSLNWRPLSASELAVGCEQGVI-VWTVDPNLMFTKPSSS 789
C ++ VS+L+W S L +G G I W D + S+S
Sbjct: 314 YCGSE--VSALSWECRSDRLLLIGTANGGIKAWNADAKRVVCDLSTS 358
>10_08_0810 +
20734490-20734606,20735182-20735433,20735521-20735664,
20735774-20736493,20736955-20737177,20737463-20737523,
20738294-20738615
Length = 612
Score = 31.1 bits (67), Expect = 1.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 514 YSRTRNWGQVPVKCLAWHPHTTKIAVATVDDNVRVYCSEVT 636
+ R + V C+ HPHT IA + +D++V+++ T
Sbjct: 361 FLRAMEGDECVVNCIEPHPHTMTIASSGIDNDVKIWTPSAT 401
>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
Length = 921
Score = 29.5 bits (63), Expect = 3.8
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +1
Query: 469 LQPHLKDIGPKIVANYSRTRNWGQVPVKCLAWHPHTTKIAVATV-DDNVRVYCSEVTFVS 645
L KDI +V + +W + ++C ++H + T A+ V ++ +R + ++ +
Sbjct: 207 LHQSAKDISKAVVGHDDDEEHWHRAALRC-SFHVNKTTTAILLVTEELIRQWAAQGFLAT 265
Query: 646 TLKCK 660
T +CK
Sbjct: 266 TSRCK 270
>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
30286718-30287042,30287563-30287818,30287901-30288117,
30288743-30289095,30289330-30289833,30291267-30292467,
30292614-30292970,30293258-30293495,30294083-30295125,
30295234-30296649,30296731-30296855,30297036-30297314,
30297352-30297382,30298957-30299022,30299447-30299689,
30299848-30299898,30299980-30300071,30300182-30300249,
30300515-30300600,30300720-30300824,30300994-30301127,
30302403-30302436,30302620-30302892,30303019-30303288,
30303384-30303974,30304065-30304214
Length = 3376
Score = 29.1 bits (62), Expect = 5.0
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = +1
Query: 670 HVSSLNWRPLSASELAVGCEQGVIVWTVDPNLMFTKPSSSNAVLLKKNGHSPVTDVSWSP 849
+++ L+W + +A+G V +W T S+S V + ++ + PVT VSW+P
Sbjct: 3056 YLNLLDWGSSNVLSIALG--NSVYLWDA------TNSSTSELVTVDED-NGPVTSVSWAP 3106
Query: 850 NG 855
+G
Sbjct: 3107 DG 3108
>09_04_0271 +
16271569-16271767,16272072-16272206,16272286-16272548,
16272865-16272996,16273083-16273199,16273752-16273904,
16274417-16274529,16274600-16274753,16274900-16275118
Length = 494
Score = 28.7 bits (61), Expect = 6.6
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 199 TFSNATKKHPIINVTRDLHHHRTSDENISMYID--VEDNLLKKITSVWYKQG 348
TFS+ T+KH + ++ H N S+YID + + KK++ ++G
Sbjct: 157 TFSDTTEKHRLQTSRKEHDHDEFLFTNDSIYIDPGISGEMRKKVSDAATREG 208
>03_02_0178 + 6195402-6199158,6199438-6200003
Length = 1440
Score = 28.7 bits (61), Expect = 6.6
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +1
Query: 643 STLKCKAQGHVSSLNWRPLSASELAVGCEQGVIVWTVDPNLMFTKPSSSNAVLLKKNGHS 822
ST+K G +++ + P SA E+A C+Q I + + T P S A +KKN
Sbjct: 560 STVKEAMHGKITAEDGCPSSALEIAKKCKQSAITEELVHEKVATSP-SQGAPEMKKNEKG 618
Query: 823 PVTDVSWS 846
++ S
Sbjct: 619 TISSKKMS 626
>02_05_1227 -
35076047-35076217,35076737-35076797,35077038-35077123,
35077213-35077301,35077685-35077766,35078094-35078136,
35078211-35078284,35078492-35078561,35078747-35078816,
35079275-35079369,35079473-35079549,35080725-35080760
Length = 317
Score = 28.7 bits (61), Expect = 6.6
Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 5/123 (4%)
Frame = +1
Query: 508 ANYSRTRNWGQVPVKCLAWHPHTTKIAVATVDDNVRVYCSEV-TFVSTLKC-KAQGHVSS 681
A Y R+ Q+ V + W + KI + D N V+ E +V TL K
Sbjct: 5 AGYECVRSHDQI-VSGIDWSRSSNKIVTVSHDRNSYVWTQEGHDWVPTLVILKLNRAALC 63
Query: 682 LNWRPLSASELAVGC-EQGVIV--WTVDPNLMFTKPSSSNAVLLKKNGHSPVTDVSWSPN 852
+ W P ++ AVG + V + + D N +K +++K S VT V+W PN
Sbjct: 64 VQWSP-KENKFAVGSGAKSVCICYYEQDNNWWISK-------VVRKKHESSVTSVAWHPN 115
Query: 853 GDL 861
L
Sbjct: 116 NIL 118
>02_04_0485 +
23338980-23339187,23339277-23339305,23339962-23340064,
23340311-23340482,23340880-23340940,23341257-23341389,
23341938-23342208,23342595-23342734,23342912-23342998,
23343078-23343586,23343671-23344488,23344522-23344720,
23345552-23345696,23345728-23345782,23347652-23347778,
23347867-23347936,23348448-23348553,23348636-23348747,
23349243-23349365,23349468-23349627,23349751-23349827,
23349925-23349977,23350151-23350205,23350500-23351174
Length = 1495
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 541 VPVKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLK 654
V +KC+A HP + +A A +D Y T +S LK
Sbjct: 799 VCMKCMAMHPEASAVAPALLDMIRSRYAKPKTSISVLK 836
>02_04_0482 +
23291986-23292181,23292289-23292317,23293500-23293602,
23293855-23293979,23294788-23294920,23295468-23295739,
23295806-23295873,23296126-23296265,23296443-23296529,
23296610-23297118,23297203-23298020,23298054-23298252,
23299084-23299228,23299260-23299314,23301184-23301310,
23301399-23301468,23301980-23302085,23302168-23302279,
23302775-23302897,23303000-23303159,23303283-23303359,
23303457-23303509,23303683-23303737,23304032-23304706
Length = 1478
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +1
Query: 541 VPVKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLK 654
V +KC+A HP + +A A +D Y T +S LK
Sbjct: 782 VCMKCMAMHPEASAVAPALLDMIRSRYAKPKTSISVLK 819
>06_03_1276 -
28907726-28907842,28908012-28908062,28908146-28908254,
28908345-28908430,28908537-28908650,28908731-28908790,
28909088-28909303,28909401-28909514,28910632-28910853,
28910946-28911050,28911136-28911276,28911368-28911472,
28911538-28911645,28911753-28911911,28912060-28912140,
28912219-28912330,28912433-28912515,28912631-28912669,
28913061-28913126,28913601-28913643,28913969-28914036,
28914264-28914323,28914409-28914529,28915167-28915267,
28915354-28915494
Length = 873
Score = 28.3 bits (60), Expect = 8.7
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +1
Query: 544 PVKCLAWHPHTTKIAVATV-DDNVRVYCSEVTFVSTLKCKAQGHVSSLNWRPLSA 705
P+K L H T K T+ + +++ Y +++ V L A+G SLN+R + +
Sbjct: 97 PLKFLRPHYGTLKAYFETMPESDLKKYMADILSVLALTMSAEGERESLNYRMIGS 151
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,768,172
Number of Sequences: 37544
Number of extensions: 419845
Number of successful extensions: 1009
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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