Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_B15
(886 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical ... 39 0.005
AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical ... 32 0.47
AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical ... 32 0.63
Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical pr... 30 1.9
Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical pr... 29 3.3
AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical ... 29 3.3
AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein. 29 3.3
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr... 29 5.8
AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein... 29 5.8
AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal chem... 29 5.8
>AL110501-4|CAB54510.1| 368|Caenorhabditis elegans Hypothetical
protein Y79H2A.6 protein.
Length = 368
Score = 38.7 bits (86), Expect = 0.005
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Frame = +1
Query: 529 NWGQVPVKCLAWHPHTTKIAVATVDDNVRVY---CSEVTFVSTLKCKAQGHVSSLNWRPL 699
N+G P+ C AW+ T+IAV+ +++ ++ + + TL + V+ L+W
Sbjct: 11 NFGIGPITCHAWNKDRTQIAVSASSNDIHIFEWRNGDWQSIHTLS-EHDLPVTGLDWGTK 69
Query: 700 SASELAVGCEQGVIVWTVDPNLMFTKPSSSNAVLLKKNGHSPVTDVSWSP 849
+ ++ ++ VWT D N+ KP VL++ N T V WSP
Sbjct: 70 TNRIVSCSQDKNAFVWTFDKNVW--KP---ELVLVRFN--RAATYVKWSP 112
>AC024818-3|AAF60780.2| 453|Caenorhabditis elegans Hypothetical
protein Y54H5A.1 protein.
Length = 453
Score = 32.3 bits (70), Expect = 0.47
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 5/107 (4%)
Frame = +1
Query: 547 VKCLAWHP-HTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQ-GHVSSLNWRPLSASE--L 714
V+ LAW P T +A + D +++++ + C Q H S +N + E +
Sbjct: 278 VEDLAWSPTETGLLASCSADGSIKLWDTRSAPKDACVCTVQKAHESDVNVISWNRHENLI 337
Query: 715 AVGCEQGVI-VWTVDPNLMFTKPSSSNAVLLKKNGHSPVTDVSWSPN 852
G + G + +W++ + F +P V L K +SP+T V W P+
Sbjct: 338 VSGGDDGELKIWSLK-TIQFGQP-----VALFKYHNSPITSVDWHPH 378
>AF106576-4|AAC78176.1| 473|Caenorhabditis elegans Hypothetical
protein W07E6.2 protein.
Length = 473
Score = 31.9 bits (69), Expect = 0.63
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +1
Query: 547 VKCLAWHPHTTKIAVATVDDNVRVYCSEV--TFVSTLKCKAQGHVSSLNWRPL 699
V C+AW P TKIA A + + ++ ++ TLK Q ++SL W+P+
Sbjct: 150 VLCIAWSPDATKIASACKNGEICIWNAKTGEQIGKTLKRHKQ-WITSLAWQPM 201
>Z78544-3|CAB01760.1| 395|Caenorhabditis elegans Hypothetical
protein K04G11.4 protein.
Length = 395
Score = 31.1 bits (67), Expect = 1.1
Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +1
Query: 547 VKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWRPLSASELAVGC 726
V C ++P T IA + D+ +R++C+ + VSS+ + + LA G
Sbjct: 193 VFCCCFNPSGTLIASGSFDETIRIWCARNGNTIFSIPGHEDPVSSVCFNR-DGAYLASGS 251
Query: 727 EQGVI-VWTVDPNLMFTKPSSSNAVLLKKNGHSPVTDVSWSPNG 855
G++ +W + + L H P+T V +SPNG
Sbjct: 252 YDGIVRIWD--------STTGTCVKTLIDEEHPPITHVKFSPNG 287
>Z73978-3|CAA98293.1| 501|Caenorhabditis elegans Hypothetical
protein ZC302.2a protein.
Length = 501
Score = 30.3 bits (65), Expect = 1.9
Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +1
Query: 547 VKCLAWHPHTTKIAVATVDDNVRVYCSEVTFVSTLKCKAQGHVSSLNWRPLSASELAVGC 726
V C +++P ++ IA A D+ VRV+ + ++S+++ + +A
Sbjct: 300 VFCCSFNPQSSLIASAGFDETVRVWDFKTGLCVKCIPAHSDPITSISYNH-DGNTMATSS 358
Query: 727 EQGVI-VWTVDPNLMFTKPSSSNAVLLKKNGHSPVTDVSWSPNG 855
G I VW S S L H+PVT V +SPNG
Sbjct: 359 YDGCIRVWDA--------ASGSCLKTLVDTDHAPVTFVCFSPNG 394
>Z92813-8|CAB07290.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 673 VSSLNWRPLSASELAVGCEQGVI-VWTVDPNLMFTKPSSSNAVLLKKNGHSPVTDVSWSP 849
V+ L+W P +LAVG + G I +W + N ++ K G +T + W P
Sbjct: 631 VTDLHWNPFDDEQLAVGTDCGQINLWRLTTNDGPRNEMEPEKII--KIGGEKITSLRWHP 688
>AL032658-5|CAA21748.1| 1057|Caenorhabditis elegans Hypothetical
protein Y76A2B.1 protein.
Length = 1057
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 673 VSSLNWRPLSASELAVGCEQGVI-VWTVDPNLMFTKPSSSNAVLLKKNGHSPVTDVSWSP 849
V+ L+W P +LAVG + G I +W + N ++ K G +T + W P
Sbjct: 631 VTDLHWNPFDDEQLAVGTDCGQINLWRLTTNDGPRNEMEPEKII--KIGGEKITSLRWHP 688
>AF129126-1|AAD25089.2| 1057|Caenorhabditis elegans POD-1 protein.
Length = 1057
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 673 VSSLNWRPLSASELAVGCEQGVI-VWTVDPNLMFTKPSSSNAVLLKKNGHSPVTDVSWSP 849
V+ L+W P +LAVG + G I +W + N ++ K G +T + W P
Sbjct: 631 VTDLHWNPFDDEQLAVGTDCGQINLWRLTTNDGPRNEMEPEKII--KIGGEKITSLRWHP 688
>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
protein F38E11.5 protein.
Length = 1000
Score = 28.7 bits (61), Expect = 5.8
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +1
Query: 730 QGV-IVWTVDPNLMFTKPSSSNAVLLKKN 813
QG+ VW VDPN+ + S++N V +KKN
Sbjct: 393 QGLEFVWAVDPNMFAVRESATN-VKIKKN 420
>AJ011523-1|CAB38019.1| 760|Caenorhabditis elegans CHE-2 protein
protein.
Length = 760
Score = 28.7 bits (61), Expect = 5.8
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Frame = +1
Query: 547 VKCLAWHPHTTKIAVATVDDNVRVYCSEVTF-VSTLKCKAQ-GHVSSLNWRPLSASELAV 720
V C+AW ++ + D Y + V+ +K KA G + +W P S+L V
Sbjct: 148 VYCVAWDSTSSNVLYCNAD---HCYIKSLKMQVAPIKWKAHDGIILCCDWNP--TSDLIV 202
Query: 721 GCEQGVIVWTVDPNLMFTKPSSSNAVLLKKNGHS-PVTDVSWSPNGDLWIV 870
T +L F +L + H P+T +SW+ +G L+ V
Sbjct: 203 ---------TGGEDLKFKVWDGFGQILFNSSVHDYPITSISWNTDGTLFAV 244
>AC006635-2|AAK68383.1| 760|Caenorhabditis elegans Abnormal
chemotaxis protein 2 protein.
Length = 760
Score = 28.7 bits (61), Expect = 5.8
Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Frame = +1
Query: 547 VKCLAWHPHTTKIAVATVDDNVRVYCSEVTF-VSTLKCKAQ-GHVSSLNWRPLSASELAV 720
V C+AW ++ + D Y + V+ +K KA G + +W P S+L V
Sbjct: 148 VYCVAWDSTSSNVLYCNAD---HCYIKSLKMQVAPIKWKAHDGIILCCDWNP--TSDLIV 202
Query: 721 GCEQGVIVWTVDPNLMFTKPSSSNAVLLKKNGHS-PVTDVSWSPNGDLWIV 870
T +L F +L + H P+T +SW+ +G L+ V
Sbjct: 203 ---------TGGEDLKFKVWDGFGQILFNSSVHDYPITSISWNTDGTLFAV 244
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,503,400
Number of Sequences: 27780
Number of extensions: 401644
Number of successful extensions: 953
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 952
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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