Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_B12
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   10.0 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   10.0 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   10.0 
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    21   10.0 
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    21   10.0 
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    21   10.0 
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    21   10.0 

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +3

Query: 21   TSHIDVVATITRKMFVKFXXXXXXXXXXSAGDYSNFAYSVADPYTGDFKNQVESRLGDNV 200
            +S +DV   + +K++ +           S+  YS+F Y  ++      +   E  L D++
Sbjct: 929  SSLVDVSTPVNKKVYKQ--NDYIVDESSSSSFYSSFLYKSSESSCNPDQKPTEYLLEDSM 986

Query: 201  KGQY 212
            K QY
Sbjct: 987  KQQY 990


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -1

Query: 242 PASTVRLQQRVLTLHVVSQSALHLVLE 162
           PAS +   Q++L  H++S + L   ++
Sbjct: 67  PASGIHQMQQLLQQHILSPTQLQSFMQ 93


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 149 LHGRLQEPGGEPTGRQREG 205
           +H  +  PG  P  ++REG
Sbjct: 393 MHNVVYRPGENPVTQKREG 411


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 149 LHGRLQEPGGEPTGRQREG 205
           +H  +  PG  P  ++REG
Sbjct: 413 MHNVVYRPGENPVTQKREG 431


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +2

Query: 149 LHGRLQEPGGEPTGRQREG 205
           +H  +  PG  P  ++REG
Sbjct: 362 MHNVVYRPGENPVTQKREG 380


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 393 YNGYFPYNYKGIFY 434
           YN Y  +NY  ++Y
Sbjct: 98  YNNYNKHNYNKLYY 111


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 393 YNGYFPYNYKGIFY 434
           YN Y  +NY  ++Y
Sbjct: 98  YNNYNKHNYNKLYY 111


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 393 YNGYFPYNYKGIFY 434
           YN Y  +NY  ++Y
Sbjct: 98  YNNYNKHNYNKLYY 111


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 393 YNGYFPYNYKGIFY 434
           YN Y  +NY  ++Y
Sbjct: 98  YNNYNKHNYNKLYY 111


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 393 YNGYFPYNYKGIFY 434
           YN Y  +NY  ++Y
Sbjct: 98  YNNYNKHNYNKLYY 111


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 393 YNGYFPYNYKGIFY 434
           YN Y  +NY  ++Y
Sbjct: 98  YNNYNKHNYNKLYY 111


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 393 YNGYFPYNYKGIFY 434
           YN Y  +NY  ++Y
Sbjct: 98  YNNYNKHNYNKLYY 111


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 393 YNGYFPYNYKGIFY 434
           YN Y  +NY  ++Y
Sbjct: 98  YNNYNKHNYNKLYY 111


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 393 YNGYFPYNYKGIFY 434
           YN Y  +NY  ++Y
Sbjct: 98  YNNYNKHNYNKLYY 111


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 393 YNGYFPYNYKGIFY 434
           YN Y  +NY  ++Y
Sbjct: 331 YNNYNKHNYNKLYY 344


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 393 YNGYFPYNYKGIFY 434
           YN Y  +NY  ++Y
Sbjct: 331 YNNYNKHNYNKLYY 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,483
Number of Sequences: 438
Number of extensions: 1705
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)