Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_B04
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch...    30   0.17 
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   2.1  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    26   3.7  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    25   4.9  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   4.9  
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy...    25   6.5  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   6.5  
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    25   8.5  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    25   8.5  
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p...    25   8.5  
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    25   8.5  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    25   8.5  

>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 870

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 190 YKSKELYIDNIEKDTTADAVTKITFAPKLRTFEMDIMEEMGIKED 324
           Y S   Y+   EK+T++D   +  FA K R FE+   +     +D
Sbjct: 372 YTSLSRYLSKSEKETSSDKTKESKFAAKKRDFELSRFDYYSYMQD 416


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1485

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 8/57 (14%)
 Frame = +1

Query: 160 IPKTAEETIDYKSKELYIDNIEKDTTA--------DAVTKITFAPKLRTFEMDIMEE 306
           + +TA++    K K+ + DN+ + +          D  TKITF P L  F MD +++
Sbjct: 223 VVETADKERMKKYKQTWYDNMSRKSEPVITSLKKPDEYTKITFKPDLAKFGMDKIDD 279


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 318  FYTHFFHNVHFKGPEFWRKS-YLSNSICSGVLFNIINVQL 202
            FY+ F +N+H++G    + S ++ +  C   ++ I NV +
Sbjct: 897  FYSFFINNIHYEGENTKKISVHVVSQRCEDEVYEIPNVTI 936


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -3

Query: 381 NTKQLCFL----VLIPVTFGGNPILFYTHFFHNV 292
           NT  +CFL    V+I   FGG    F T + H V
Sbjct: 164 NTVAVCFLLPVGVIIYTMFGGIKATFLTDYIHTV 197


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 16/70 (22%), Positives = 30/70 (42%)
 Frame = +1

Query: 115 GDKVRVSLASSRIIPIPKTAEETIDYKSKELYIDNIEKDTTADAVTKITFAPKLRTFEMD 294
           G ++RV   S+  + +  T+    D+   E+ +   + + T   + +IT  PK       
Sbjct: 463 GHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQS 522

Query: 295 IMEEMGIKED 324
               MGI +D
Sbjct: 523 NKPVMGIVQD 532


>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 15/65 (23%), Positives = 30/65 (46%)
 Frame = +1

Query: 112 EGDKVRVSLASSRIIPIPKTAEETIDYKSKELYIDNIEKDTTADAVTKITFAPKLRTFEM 291
           +GD+   S     ++P+    +E  D+ S     +N  +  TA+A+T        R  + 
Sbjct: 582 KGDQSEDSNDHIEVVPVASAHDEDDDWNSDSDNDENNVEIVTAEAMTLAQDIASRRKSKA 641

Query: 292 DIMEE 306
           D+++E
Sbjct: 642 DLIDE 646


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -2

Query: 142 WPMTLVPYLLLQCISILHQ 86
           WPMTLV  L   C+ I+ Q
Sbjct: 227 WPMTLVERLCRSCVLIVGQ 245


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +1

Query: 118 DKVRVSLASSRIIPIPKTAEETIDYKSKELYIDNIEKDTTADAVTKI 258
           D+V+ S+++S  + +    +E    +S  LY++  +K      VT++
Sbjct: 100 DRVKHSVSNSCKLHLSLQGQEAAQLRSDSLYLEASDKRDLTSLVTRV 146


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 342 TFGGNPILFYTHFFHNVHFKG-PEFWR---KSYLSNSICSG 232
           TF  +PI   ++F+  +   G P  +      YL+NS+CSG
Sbjct: 433 TFTDSPIYLISYFYDRMISLGMPSTFTIEDMKYLANSVCSG 473


>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 535

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/52 (23%), Positives = 25/52 (48%)
 Frame = +1

Query: 175 EETIDYKSKELYIDNIEKDTTADAVTKITFAPKLRTFEMDIMEEMGIKEDRV 330
           EET DY   ++YI  + K+ +   V    +A  +  ++   + E G+ +  +
Sbjct: 272 EET-DYLRDKIYIPKVYKEISGKRVMVTEWADGIPLYDQTALSEAGMSKKEI 322


>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -3

Query: 285 KGPEFWRKSYLSNSICSGVLFNIINVQLFTLVINCFFGCFRNGYDSTAGQ*HSY 124
           K P+ + K YL N + +  L N  NV L   V+      +   Y+   G+  SY
Sbjct: 246 KSPDSFDKQYLRNWLTANNLANKPNVSLPEDVVEATRRKYVEAYEMITGKKWSY 299


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 183 CFFGCFRNGYDSTAGQ*HSYLISFFSVSPFY 91
           C + CF+ G ++ + + HS L +   + P Y
Sbjct: 236 CIYSCFKYGSNAYSHEPHSQLRNLQLLGPLY 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,591,655
Number of Sequences: 5004
Number of extensions: 30251
Number of successful extensions: 93
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)