Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_B04
         (503 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_9332| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.0  

>SB_43379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3066

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +1

Query: 190  YKSKELYIDNIEKDTTADAVTKITFAPKLRTFEMDIMEEMGIKEDRVPA 336
            Y  K L    I+ +TT+   T  T     RT  MD+  E  IKED VP+
Sbjct: 2125 YAYKALEFKVIQPETTSGKSTIATSQDYHRTTVMDLFREEAIKED-VPS 2172


>SB_9332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 109 EEGDKVRVSLASSRIIPI---PKTAEETIDYKSKELYIDNIEKD 231
           EEGDK+   L +   IP        + T++ + KEL   NIE+D
Sbjct: 19  EEGDKIYEDLCAVNYIPNFINDPRVKNTLNAEDKELIFINIERD 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,489,154
Number of Sequences: 59808
Number of extensions: 211900
Number of successful extensions: 535
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)