Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_B02
         (830 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    27   0.18 
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    23   3.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   9.1  

>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +3

Query: 516 HDYIGEYCNLVWCYYSNFNLYLFGKFCFVIITYSI 620
           H    E CNL  C  +N ++Y F  F FV+ T+SI
Sbjct: 215 HGVHNELCNL--CQVAN-SIYGFQNFLFVLSTFSI 246


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -2

Query: 649 TQKKIKFWFSIEYVIITKQNLP 584
           ++K++K WF    V   K++LP
Sbjct: 157 SEKQVKIWFQNRRVKYKKEDLP 178


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 558 YSNFNLYLFGKFCFVIIT 611
           YSNF+++LF     V +T
Sbjct: 70  YSNFSVFLFDIITIVTLT 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,924
Number of Sequences: 336
Number of extensions: 4008
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)