Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_B02
         (830 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.21 
SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.87 
SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  

>SB_8363| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 776

 Score = 33.5 bits (73), Expect = 0.21
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -2

Query: 211 SMVRFQS*SRLSSVCSPVVHQLSSRRDSRLCVSSSSPSAHL*GPEPGQ 68
           S +  +S S  SSVC  V+H+LS+ R   +C S     A+   P  GQ
Sbjct: 430 SYIVCRSISYTSSVCRSVIHRLSANRSKTVCRSIGHTGAYTGAPLDGQ 477


>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 31.5 bits (68), Expect = 0.87
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 307 EDKLKVEKLIDACLANKGNSPHQTAWNYVKCYHEKDPK-HALFL 435
           E+ + V KL D  L NKG  PH    N    ++E DPK H LF+
Sbjct: 341 EESVDVTKL-DYYLMNKGYIPHADRLNDTLHHYETDPKYHRLFI 383


>SB_51224| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 808

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 19/62 (30%), Positives = 34/62 (54%)
 Frame = -3

Query: 426 SVLRVFLVVAFHVIPGCLVRAVAFVGQASVNQLLYFQFVFSIRHFSQSDVLLEFPVLGHQ 247
           SVL VF+V+   +IPG  V A  +V     N  + +++VF+     Q  ++L F +L  +
Sbjct: 26  SVLLVFMVLLIVMIPGTWVAAAIYVKHFQDN--VIWEYVFAGSCALQGILVLLFGLLDRE 83

Query: 246 LR 241
           ++
Sbjct: 84  IK 85


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,674,397
Number of Sequences: 59808
Number of extensions: 475105
Number of successful extensions: 1429
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1426
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2335516755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)