Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_B01
         (548 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2ECY5 Cluster: Ankyrin repeat protein, putative; n=1; ...    35   1.4  
UniRef50_P38339 Cluster: RHO GTPase-activating protein RGD1; n=7...    32   7.6  

>UniRef50_A2ECY5 Cluster: Ankyrin repeat protein, putative; n=1;
           Trichomonas vaginalis G3|Rep: Ankyrin repeat protein,
           putative - Trichomonas vaginalis G3
          Length = 620

 Score = 34.7 bits (76), Expect = 1.4
 Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
 Frame = -2

Query: 262 ALNNRIKFNW----LYEDLTVK**CCNIHIISF--ISYNIRSLTCSRKLLFVLSLKEKNS 101
           A+ + IKFN+    LY  L  K   C  H I++  I+Y+I     S +L F  S KEKNS
Sbjct: 53  AITSAIKFNFRSAFLYASLFNK--ICRDHSINYHSINYHIADSRNSLQLCFPESFKEKNS 110

Query: 100 VTEFDT 83
           + + D+
Sbjct: 111 IAQIDS 116


>UniRef50_P38339 Cluster: RHO GTPase-activating protein RGD1; n=7;
           Saccharomycetales|Rep: RHO GTPase-activating protein
           RGD1 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 666

 Score = 32.3 bits (70), Expect = 7.6
 Identities = 18/72 (25%), Positives = 39/72 (54%)
 Frame = +3

Query: 57  AFE*SILAKVSNSVTEFFSFKLKTNNNFREHVKERILYEMNEMI*ILQHYYLTVRSSYSQ 236
           AFE   + ++S     FF+ +  TN++ ++ + E + ++  +M  + Q Y   ++  YS+
Sbjct: 71  AFEEEHVQELSKQYKHFFNIQGSTNSSLKKMIHEVLGFD-GKMAQVKQSYITALQKMYSE 129

Query: 237 LNFILLFNAWLR 272
           ++ +LL    LR
Sbjct: 130 ISSLLLTMTKLR 141


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 441,244,444
Number of Sequences: 1657284
Number of extensions: 7425242
Number of successful extensions: 13267
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 12954
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13265
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 35822246242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)