Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_B01
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    27   2.4  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    26   3.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    26   4.2  
SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1 |Schizos...    25   5.6  
SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    25   7.3  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    25   9.7  

>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2100

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +3

Query: 207  YLTVRSSYSQLNFILLFNAWLRIIIIVAVEF 299
            +L ++    +  F LL+N +LRII+++  +F
Sbjct: 1795 FLDLKDDIDKAQFKLLYNGFLRIILVLLHDF 1825


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1811

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 18/60 (30%), Positives = 31/60 (51%)
 Frame = +3

Query: 63   E*SILAKVSNSVTEFFSFKLKTNNNFREHVKERILYEMNEMI*ILQHYYLTVRSSYSQLN 242
            E S+++KV  S   F  F LK  N F++   + I+  +N+++ +     L   S Y Q+N
Sbjct: 1521 ENSMISKVGLSC--FSQFVLKNKNQFKDVDWDEIINSINQLLQMTLPIELRDPSLYPQVN 1578


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +3

Query: 117  KLKTNNNFREHVKERILYEMNEM 185
            +L   NN +EHV ER + E N+M
Sbjct: 1385 RLNLVNNHKEHVLERAMSENNKM 1407


>SPBC25H2.06c |hrf1||COPII-coated vesicle component Hrf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 293

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
 Frame = +3

Query: 78  AKVSNSVTEFFSFKLKTN--NNFREHVKERILYEMNEMI*ILQHYYLTVRSSYSQLNFIL 251
           A + NS T    F+L  N  N  +E+V++     ++       H+Y TV +SY     +L
Sbjct: 46  AYLPNSATAQMGFQLGKNAVNAGQEYVEQNFGKWLSTT---RLHHYFTVTNSYVVAKLLL 102

Query: 252 LFNAWLR 272
           +   W R
Sbjct: 103 IIFPWRR 109


>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 363 KRELIEIRIKLM*HYNNPLVKRLFIICDTISQT 461
           ++ +IE RI+++   NNP + +LF+  D    T
Sbjct: 751 RKPVIEFRIRMVDSSNNPGLTKLFLKPDMFDTT 783


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -2

Query: 193 IHIISFISYNIRSLTCSRKLLFVLSLKEKNSVTEFDTFASIDHSKAT 53
           + IIS I   + SL   R  L    LK +N +  F+TF   D    T
Sbjct: 139 LKIISDIVQGVASLHYLRPPLIHRDLKVENVLLSFNTFKLCDFGSVT 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,214
Number of Sequences: 5004
Number of extensions: 35146
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)