Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_A22
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 48 1e-06
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 37 0.002
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 31 0.083
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 28 1.0
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo... 26 3.1
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 4.1
SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual 25 7.2
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 9.5
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 25 9.5
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 47.6 bits (108), Expect = 1e-06
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +1
Query: 19 AFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEIDTDGSGTVDFDEFMEMMTG 198
AF+++DK+GNGYI L + I+E DTDG G ++++EF +++
Sbjct: 90 AFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDGVINYEEFSRVISS 149
Query: 199 E 201
+
Sbjct: 150 K 150
Score = 44.0 bits (99), Expect = 1e-05
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = +1
Query: 19 AFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEIDTDGSGTVDFDEFMEMM 192
AF L+D++ +G I ++ L + I E+D DG+GT+DF EF+ MM
Sbjct: 17 AFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMM 74
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 37.1 bits (82), Expect = 0.002
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +1
Query: 19 AFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEIDTDGSGTVDFDEFME 186
AFR++DK+ +GYI T+ + +QE D SG+ D+ +F++
Sbjct: 83 AFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQ 138
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 31.5 bits (68), Expect = 0.083
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Frame = +1
Query: 19 AFRLYDKEGNGYIPTSSL-----REIXXXXXXXXXXXXXXXXIQEIDTDGSGTVDFDEFM 183
AF++YD + +GYI L + I E+D D G + F+EF
Sbjct: 98 AFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEFK 157
Query: 184 EMMTG 198
++++G
Sbjct: 158 DIVSG 162
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 139 IDTDGSGTVDFDEFMEMMT 195
+D DG G VDF EF+ ++
Sbjct: 65 VDEDGGGDVDFQEFINSLS 83
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 27.9 bits (59), Expect = 1.0
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +1
Query: 19 AFRLYDKEGNGYIPTSSLREIXXXXXXXXXXXXXXXXIQEIDTDGSGTVDFDEFMEMM 192
AF L+D+ G G IP +S+ ++ I EI++ VD ++F++++
Sbjct: 11 AFSLFDRHGTGRIPKTSIGDL----LRACGQNPTLAEITEIESTLPAEVDMEQFLQVL 64
>SPAC110.02 |pds5||cohesin-associated protein
Pds5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1205
Score = 26.2 bits (55), Expect = 3.1
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -3
Query: 425 VDNIKYNSTTPDQLRTINYSLYNTYIILEKLADR 324
V+N++YN P +L T+ T +EK+AD+
Sbjct: 747 VENLEYNGGLPVRLMTLGQLFLYTLEEVEKVADQ 780
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 4.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +2
Query: 74 ARSSGNWTSS*LTMNSMASSKRSTLTEAAPSTSTSS 181
A ++G+ TSS T + SS S T +A +STSS
Sbjct: 968 ASATGSSTSSIATASVSGSSTSSVATASATDSSTSS 1003
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +2
Query: 68 ACARSSGNWTSS*LTMNSMASSKRSTLTEAAPSTSTSS 181
A A +G+ TSS T + SS S T +A +STSS
Sbjct: 1005 AAASVTGSSTSSVATASVTDSSTSSVATASATDSSTSS 1042
>SPCC594.06c |||SNARE Vam7 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 341
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/40 (30%), Positives = 17/40 (42%)
Frame = +2
Query: 65 RACARSSGNWTSS*LTMNSMASSKRSTLTEAAPSTSTSSW 184
R C S +W SS +T + S+R L S + W
Sbjct: 59 RLCKLPSKSWVSSTVTNEKLRESRRLALQAYVQCLSETPW 98
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 9.5
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 180 ELVEVDGAASVSV-DLLDEAIEFIVSQLLVQFPEDLAQARRGNVTV 46
EL V A S DL D AI ++Q+L F +DL + VT+
Sbjct: 1246 ELTNVVNVALTSTGDLDDSAIVSKLNQILSDFRDDLLEHNVRRVTI 1291
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 24.6 bits (51), Expect = 9.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -3
Query: 428 SVDNIKYNSTTPDQLRTINYSLYNTYIILEKLADRYCFVAAN*C 297
+V + KY ++ DQ TI + +TY LEK+ D+ + N C
Sbjct: 92 AVPSKKYTASF-DQSGTIGFDKESTYWKLEKILDKDLDMDVNYC 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,242
Number of Sequences: 5004
Number of extensions: 23551
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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