Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_A21
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888 130 1e-30
05_04_0048 - 17493775-17494431,17494506-17494801,17494851-174949... 31 0.84
11_06_0445 - 23679918-23680282,23680415-23683349 29 4.5
09_04_0139 + 15030753-15031208,15031298-15031523,15031599-150319... 29 5.9
05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515 29 5.9
03_05_0697 + 26888791-26888861,26890468-26890579,26891561-268917... 29 5.9
>11_04_0204 - 14844634-14844789,14844882-14845418,14846280-14846888
Length = 433
Score = 130 bits (315), Expect = 1e-30
Identities = 61/89 (68%), Positives = 70/89 (78%)
Frame = +2
Query: 554 TKYPDLLKDVKGITEETTTGVHNLYKMFREGLLKVPAINVNDSVTKSKFDNLYGCRESLL 733
+KY + + + G++EETTTGV LY+M G L PAINVNDSVTKSKFDNLYGCR SL
Sbjct: 156 SKYRKMKERLVGVSEETTTGVKRLYQMQETGALLFPAINVNDSVTKSKFDNLYGCRHSLP 215
Query: 734 DGIKRATDIMIAGKVCVXAGYGDVGKGCA 820
DG+ RATD+MIAGKV V GYGDVGKGCA
Sbjct: 216 DGLMRATDVMIAGKVAVVCGYGDVGKGCA 244
Score = 99.1 bits (236), Expect = 4e-21
Identities = 69/198 (34%), Positives = 95/198 (47%), Gaps = 6/198 (3%)
Frame = +2
Query: 215 MPGLMACRRKYAPAXILKGARIAGSLHMTVQTAVLIETLIELGAEVQW-SSSNIYSTQDE 391
MPGLMACR ++ P+ KGARI+GSLH T+Q AVLIETL LG ++
Sbjct: 1 MPGLMACRAEFGPSQPFKGARISGSLHRTIQAAVLIETLTALGRRGPLVLLQHLLHAGPR 60
Query: 392 AAAALVAVGIPIYAWKGETDDEYIWCIEQTLIFPDGKPLNMILDDGGDLTNLVH---TKY 562
++AWKGET +EY WC E+ L + G ++I+DDGGD T L+H
Sbjct: 61 RRPPSPRDSAAVFAWKGETLEEYWWCTERCLDWGVGAGPDLIVDDGGDATLLIHEGVKAE 120
Query: 563 PDLLKDVKGITEETTTGVH--NLYKMFREGLLKVPAINVNDSVTKSKFDNLYGCRESLLD 736
+ K K E+T + + R+GL P+ K K + L G E
Sbjct: 121 EEFEKSGKVPDPESTDNAEFKIVLTIIRDGLKSDPS-----KYRKMK-ERLVGVSEETTT 174
Query: 737 GIKRATDIMIAGKVCVXA 790
G+KR + G + A
Sbjct: 175 GVKRLYQMQETGALLFPA 192
>05_04_0048 -
17493775-17494431,17494506-17494801,17494851-17494958,
17495463-17495544,17495561-17495740
Length = 440
Score = 31.5 bits (68), Expect = 0.84
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Frame = +2
Query: 188 KEIMLAEKEMPGLMACRRKYAPAXILKGARIAGSLHMTV------QTAVLIETLIELGAE 349
KE+M E PG++ R + +++ IA LH V QTA L+ + L +
Sbjct: 197 KELMEGVSE-PGVLQSRLSKITSFLVQATSIAAGLHDEVPLQIRGQTAALVTQISGLEQQ 255
Query: 350 VQWSSSNIYSTQDE 391
V+ S + ST+DE
Sbjct: 256 VEELSKKLCSTEDE 269
>11_06_0445 - 23679918-23680282,23680415-23683349
Length = 1099
Score = 29.1 bits (62), Expect = 4.5
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +2
Query: 500 KPLNMILDDGGDLTNLVHTKYPDLLKDV 583
+P + I DG DL N V + +PD + D+
Sbjct: 1007 QPTDEIFQDGMDLHNFVESAFPDQISDI 1034
>09_04_0139 +
15030753-15031208,15031298-15031523,15031599-15031981,
15032353-15032685,15032902-15033010,15033089-15033465
Length = 627
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 521 DDGGDLTNLVHTKYPDLLKDVKGITEETTTGVHNLYKM 634
DD + +L H Y D +KD K E +HN KM
Sbjct: 448 DDDNFIISLDHKHYADHIKDHKADAEYLNKPIHNYSKM 485
>05_04_0183 - 18849749-18850225,18850305-18850431,18851762-18853515
Length = 785
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = -2
Query: 663 AGTFKSPSRNILYKLCTPVVVSSVIPFTSFKRSGYLVWTKFVKSPPSSKI 514
AG+ + P ++ + P+ +++ PF SF+ ++V + V SPP++ +
Sbjct: 98 AGSARLPYPDVKWAAVPPLAIAAGAPFASFRAERWIVVS--VSSPPTAAL 145
>03_05_0697 + 26888791-26888861,26890468-26890579,26891561-26891757,
26892215-26892266,26893530-26893795,26894007-26894229,
26895154-26895327,26895408-26895485,26895566-26895817,
26896138-26898204,26899477-26901322,26901474-26901574,
26902179-26902535,26902681-26902799,26903558-26903559,
26903630-26903662,26903709-26903841,26904285-26904537,
26905688-26905912,26906401-26906466,26907373-26907471,
26908528-26908545,26908546-26908893,26909878-26910354
Length = 2522
Score = 28.7 bits (61), Expect = 5.9
Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 9/170 (5%)
Frame = +2
Query: 263 LKGARIAGSLHMTVQTAVLIETLIELGAEVQWSSSNIYSTQDEAAAALVAVGIPIYAWKG 442
L GARI S + + + + T L A+V+ SS + Q + +P+ A +
Sbjct: 859 LNGARIMKSTRIQI-SCIPFGTSSLLDAKVESSSKRDWVVQGLDVHICMPYRLPLRAIED 917
Query: 443 ETDD-----EYIWCIEQTLIFPDGKPLNMILDDGGDLTNLVHTKYPDLLKDVKGITEETT 607
+D + I ++T++FPDGK + G T+ K+ L K I EE
Sbjct: 918 AVEDMIRALKLISAAKKTMLFPDGKENPRKVKSG--TTSFGSVKFV-LRKLTAEIEEEPI 974
Query: 608 TG-VHNLYKMFREGL--LKVPAINVNDSVTKSKFDNLYGCRESLL-DGIK 745
G + Y + R + L V + ++++ S N +E LL DGI+
Sbjct: 975 QGWLDEHYHLMRNKVCELGVRLKFLEEAISGSVDPNNCSSKEKLLYDGIE 1024
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,660,196
Number of Sequences: 37544
Number of extensions: 448008
Number of successful extensions: 1041
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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