Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_A19
(686 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0419 - 16909382-16909396,16909407-16909463,16909537-16909725 32 0.49
03_02_0028 - 5118621-5119448 31 1.1
11_04_0375 + 16933688-16933703,16936291-16937063 29 3.5
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 29 4.6
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 29 4.6
10_07_0081 - 12716130-12716271,12716367-12716449,12716729-127167... 28 6.0
10_06_0186 + 11595041-11595182,11596442-11596473,11596628-115967... 28 8.0
09_04_0371 - 17020539-17020607,17020697-17020747,17020888-170210... 28 8.0
04_04_1638 + 34974369-34974764 28 8.0
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 28 8.0
>08_02_0419 - 16909382-16909396,16909407-16909463,16909537-16909725
Length = 86
Score = 31.9 bits (69), Expect = 0.49
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +1
Query: 49 EMVVVIKKILFVGICSVIFCVYHYCVSVKLQCVFWC 156
EM+V++K +L G+CSV YCV LQC C
Sbjct: 44 EMMVMMKLMLVGGVCSVGLIAKPYCVG--LQCAMRC 77
>03_02_0028 - 5118621-5119448
Length = 275
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 1/73 (1%)
Frame = +3
Query: 471 SPRVA-PARQRIARGKKATFKRRSKTNGSSEHFDRFTGTSQASVRTCGERVGKSTRDLPK 647
+PR+ AR R+ R ++ +R +GSS FT + +CG VG +
Sbjct: 95 TPRLKIDARSRLRRSRRRLHRRADPVSGSSGDSGWFTSDEDSYANSCGVGVGGGEAETLV 154
Query: 648 GRR*PQSKSGXVG 686
+S SG G
Sbjct: 155 TSTTTESSSGASG 167
>11_04_0375 + 16933688-16933703,16936291-16937063
Length = 262
Score = 29.1 bits (62), Expect = 3.5
Identities = 12/26 (46%), Positives = 19/26 (73%)
Frame = +3
Query: 447 RGKSSIKCSPRVAPARQRIARGKKAT 524
+GK+SIK +P + A QR++R KK +
Sbjct: 229 KGKNSIKGNPLIRIASQRVSRSKKGS 254
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 28.7 bits (61), Expect = 4.6
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +3
Query: 450 GKSSIKCSPRVAPARQRIARGKKATFKRRSKTNGSSEHFDRFTGTSQASVRTCGERVGKS 629
GKSS K + VAP ++ GK ++ K N E + Q +VR E+V S
Sbjct: 2 GKSSKKSAVEVAPTSVSVSEGKSG---KKGKRNAEDEIEKAVSAKKQKTVR---EKVVPS 55
Query: 630 TRDLPKGRR*PQSK 671
+ K ++ P K
Sbjct: 56 KEEAKKVKKQPPPK 69
>01_04_0010 -
15058175-15058195,15058320-15058430,15059031-15059246,
15059327-15059505,15059655-15059820,15059914-15059972,
15060065-15060107,15060285-15060354,15060458-15060547,
15060621-15060742,15060777-15060808,15060876-15061064,
15061148-15061241,15061325-15061412,15061498-15061718,
15061924-15061997,15062081-15062363,15062455-15062589,
15062721-15062942,15063029-15063208,15063305-15063402,
15063522-15063634,15064156-15064259,15064400-15064522,
15064857-15065192
Length = 1122
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +2
Query: 533 KEQNKWEF*TLR*VHWNEPGERTNVRRESRKEHSRPSKRQ 652
KE+NK +F L +W EP R R S E+ + + RQ
Sbjct: 779 KEENKLDFKKLVSDNWIEPPRRERKRNYSESEYFKQALRQ 818
>10_07_0081 - 12716130-12716271,12716367-12716449,12716729-12716785,
12716886-12716942,12717014-12717113,12717204-12717274,
12718284-12718460,12719142-12719312,12722151-12722234,
12722310-12722354,12722447-12722537,12722745-12722863,
12723213-12723434,12723630-12723854,12725366-12725571,
12726081-12726258,12726702-12726762,12727930-12728039,
12728126-12728257,12729136-12729208,12729608-12729645,
12730373-12730474,12730565-12730622,12731071-12731172,
12731240-12731386,12732023-12732159,12732256-12732405,
12733103-12733259,12733615-12733673,12733982-12734138,
12734209-12734354,12739177-12739320,12739478-12739606
Length = 1309
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +1
Query: 316 KLRRLVKNYQPKRKEEDEYQYTACKAFKQLLQELGDFAGQREVVAENL-QSNVVRELHLL 492
KL ++V++ + + + +E + CK + Q+LG +E++ NL Q ++ + L
Sbjct: 850 KLLKIVESLKCELEAANEEKINGCKEVASMQQQLGLSIKDQELLHSNLAQIEELKRENTL 909
Query: 493 AKELREERKQHLNEGAK 543
K E +Q L + K
Sbjct: 910 LKGKNAEMEQELLKAQK 926
>10_06_0186 +
11595041-11595182,11596442-11596473,11596628-11596722,
11596841-11596925
Length = 117
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = -1
Query: 458 RFSATTSR-CPAKSPNSCSNCLNALHAVYWY 369
RFS T SR C A S +N N + +VYW+
Sbjct: 25 RFSGTISRRCDAVSAVGGANSGNGIESVYWW 55
>09_04_0371 -
17020539-17020607,17020697-17020747,17020888-17021058,
17023296-17023404,17023570-17023676,17024429-17024640,
17024805-17024952
Length = 288
Score = 27.9 bits (59), Expect = 8.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +2
Query: 560 TLR*VHWNEPGERT-NVRR---ESRKEHSRPSKRQTLTSI 667
TL+ VHW+EP E T N R E H PS + + S+
Sbjct: 138 TLKQVHWHEPSEHTINGTRFDAEMHMVHEDPSMARAVVSV 177
>04_04_1638 + 34974369-34974764
Length = 131
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 447 RGKSSIKCSPRVAPARQRIARGKKATFKRRSKTNGSSEHFDRFTG 581
RG + + AP RG A KR+ K+N + HF R G
Sbjct: 72 RGLRRNRNTSMFAPPAHGEIRGAHAASKRKRKSNAADSHFRRARG 116
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 27.9 bits (59), Expect = 8.0
Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +2
Query: 263 NMETLSRRGAL*NWNMQ-ENSGGLSKIINQKGKKKMNTSIQHVKHLNS 403
N ETLSR MQ E++ LSKI ++ K + IQ V+ LNS
Sbjct: 571 NSETLSREHKEFMSKMQQEHASWLSKIQQERQDLKRDIDIQRVELLNS 618
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,671,939
Number of Sequences: 37544
Number of extensions: 352871
Number of successful extensions: 959
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -