Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_A19
         (686 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.7  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   3.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   4.8  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.3  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    21   8.3  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 204 KLNTPTHLSGSKITSHTPKNTLKLH*HTIVVNTK 103
           K+N     SG+KI+  T K+ +K +  T V N+K
Sbjct: 544 KMNETYINSGNKISLATSKSFIKANSQTEVSNSK 577


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +1

Query: 376 YTACKAFKQLLQELGDFAGQREV--VAENLQSNVVRELHLLAKELREERKQHLNEGAKQ 546
           +++ K  +    ELG    ++ +  + E LQ NV+++ HLL    +++    L + A Q
Sbjct: 124 FSSLKDHQHQFAELGRKKLEQAIQQLQEQLQLNVIQQTHLLQTADKKKASAPLQQLALQ 182


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -3

Query: 66  NHYHHFETHSIKNKH 22
           NH+HH ++ ++++ H
Sbjct: 146 NHHHHLQSTAVQDHH 160


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 231 PYAQRNRVFR*IWKLCQGEVRY 296
           P A  ++    IWK C+G++ Y
Sbjct: 188 PLAHYDQTAIEIWKQCEGKIDY 209


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -3

Query: 237 RMGG*VIILIPKLNTPTHLSGSKITSHTPKNTLKLH*HTIVVNTKNYRTNSDK*YFFNHY 58
           + GG    LIP  N P     S       K+ L L+ H  +++  N+         F+HY
Sbjct: 186 KKGGLKDNLIPDKNDPDSKECSNQEYEIMKDNLLLYNHARLMSQDNHSKEYLVSIMFSHY 245


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 599 TNVRRESRKEHSRPSK 646
           T +RR  +  H+RPSK
Sbjct: 16  TRLRRHIQNVHTRPSK 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,787
Number of Sequences: 438
Number of extensions: 4222
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)