Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P11_F_A17
(744 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 32 0.099
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 29 0.53
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 27 2.8
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 27 3.7
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 26 6.5
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 6.5
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.5
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 25 8.6
SPBC428.01c |nup107|SPBC582.11c|nucleoporin Nup107|Schizosacchar... 25 8.6
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 31.9 bits (69), Expect = 0.099
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = +1
Query: 328 VYISELIDEICKKMDDYVRVYYKSTGKLTIMQLMTKEGGMNPEFSKTKFVTDDDLNKSLE 507
++I L DE+ D+ ++ + + G +T ++MT E G + F + T ++ NK++
Sbjct: 366 LFIKNLQDEVD---DERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVT 422
Query: 508 YYCERM 525
+RM
Sbjct: 423 EMNQRM 428
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 29.5 bits (63), Expect = 0.53
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = +1
Query: 226 IKSIDKWKRVDVGNFRMDKDGNTMQQKVPAHRSAVYISELIDEI--CKKMDDYVRV 387
IK I++ KR+D + + T Q P +++ L+DE C+ +DDYVR+
Sbjct: 47 IKLIEELKRLDKKK-ELSEARKTFQSIFPLSED-LWVDYLLDECKNCRTLDDYVRI 100
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 27.1 bits (57), Expect = 2.8
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +1
Query: 574 DDDVMPDAEREICFN--HAKYCEEWMLPTEE 660
D +PDAEREI N A+Y ++W+ E+
Sbjct: 103 DTSFLPDAEREIRENAKRAEYRKQWLKEQEQ 133
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.6 bits (56), Expect = 3.7
Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 11/99 (11%)
Frame = +1
Query: 259 VGNFRMDKD---GNTMQQKVPAHRSAVYISELIDEICKKMDDYVRVYY--------KSTG 405
V +DK+ GN QK ++ S +Y+ + + Y RV S
Sbjct: 53 VSEASLDKESTVGNLENQKNRSYSSEIYLHSDTNFLSNFDSAYERVRRLLNQQGGKSSLQ 112
Query: 406 KLTIMQLMTKEGGMNPEFSKTKFVTDDDLNKSLEYYCER 522
K + Q+ T+EGG N + S + D D N L+ E+
Sbjct: 113 KKEVEQIETQEGGDNAKGSPSSENKDSDRNSRLQQLIEK 151
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.8 bits (54), Expect = 6.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 242 NGKESMSATSEWTKMATQCSRKCPLTD 322
N KE+++A EW + + CS L D
Sbjct: 559 NDKEAVAALDEWYSILSTCSNPSELLD 585
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Frame = +1
Query: 481 DDDLNKSLEYYCERMFEDNEDEITSL----YVKRPDDDVMPDAEREICFNHAKY 630
D+ +++ YY +R+F+ N +++ + VK DDV+ D + F +Y
Sbjct: 196 DEYKSQAKSYYFDRLFDQNINKVFDVVPVTQVKNAPDDVLEDLFKNYDFIVTEY 249
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.8 bits (54), Expect = 6.5
Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +1
Query: 445 MNPEFSKTKFVTDDDLNKSLEY---YCERMFEDNEDEITSLYVK 567
+ P F+ V D N ++ + E + ED+ED++ +Y K
Sbjct: 67 LTPRFTSNSMVLPGDHNTTVRLKPSFREALMEDSEDDLYQMYSK 110
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +2
Query: 248 KESMSATSEWTKMATQCSRKCPLTDLRSTFPNLLM 352
KE +++ W + C C L + + FPN L+
Sbjct: 794 KEDITSIFSWEILGDACLSFCQLKNYHNRFPNSLI 828
>SPBC428.01c |nup107|SPBC582.11c|nucleoporin
Nup107|Schizosaccharomyces pombe|chr 2|||Manual
Length = 794
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +1
Query: 499 SLEYYCERMFEDNEDEITSLYVKRPDDDVMPDAEREICFNHAKYCEEWMLPTEE 660
++EY + + + +E+ ++Y+K ++ V P ++ IC EW+L T +
Sbjct: 530 AVEYVYDEVVSVSPEEVHTVYLKSIEEPVEPSYKKLIC------TLEWLLITSQ 577
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,160
Number of Sequences: 5004
Number of extensions: 58034
Number of successful extensions: 182
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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