Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_A17
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13070-11|AAK67223.1|  193|Caenorhabditis elegans Hypothetical p...    36   0.040
Z79754-5|CAB02094.2|  573|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical ...    29   3.5  
U41014-4|AAK32946.3|  557|Caenorhabditis elegans Hypothetical pr...    28   6.1  
U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical p...    28   6.1  
Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z81581-6|CAB04666.1|  679|Caenorhabditis elegans Hypothetical pr...    28   8.0  
Z81581-5|CAB04667.2|  646|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U41990-3|AAY44010.1|  291|Caenorhabditis elegans Hypothetical pr...    28   8.0  
AL132949-5|CAB61074.1|  144|Caenorhabditis elegans Hypothetical ...    28   8.0  
AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPas...    28   8.0  
AC024818-2|AAF60781.1|  302|Caenorhabditis elegans Temporarily a...    28   8.0  

>U13070-11|AAK67223.1|  193|Caenorhabditis elegans Hypothetical
           protein F01F1.15 protein.
          Length = 193

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
 Frame = +1

Query: 226 IKSIDKWKRVDVGNFRMDKDGNTMQQK-VPAHRSAVYISELIDEICKKMDDYVRVYYKST 402
           I ++D  K+++VG+FR+   G+    K +   RS  +++E+I+  C     Y  V    T
Sbjct: 40  IAAVDPKKKIEVGSFRVSPTGDQKGLKEIGYARSESHLTEIIEHACDDAKHYKLVVNTIT 99

Query: 403 GK 408
           GK
Sbjct: 100 GK 101


>Z79754-5|CAB02094.2|  573|Caenorhabditis elegans Hypothetical
           protein F25H2.6 protein.
          Length = 573

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 4/71 (5%)
 Frame = +1

Query: 400 TGKLTIMQLMTKEGGMNPEFSK----TKFVTDDDLNKSLEYYCERMFEDNEDEITSLYVK 567
           T K+ I  + +      P F +    T+ V+   L +      E M +DN    TS  + 
Sbjct: 203 TSKVVIPNIPSSSSSTPPPFREPLCATRSVSSSVLRRESIVEQEYMSDDNSTMTTSTIIA 262

Query: 568 RPDDDVMPDAE 600
           RPD DV  D +
Sbjct: 263 RPDIDVTSDCD 273


>AC024777-5|AAF60564.1|  506|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.1 protein.
          Length = 506

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 253 VDVGNFRMDKDGNTMQQKVPAH 318
           V +GN R+DKD +TM++ +  H
Sbjct: 41  VSIGNIRLDKDNDTMKEVLKQH 62


>U41014-4|AAK32946.3|  557|Caenorhabditis elegans Hypothetical
           protein C06G1.5 protein.
          Length = 557

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 400 TGKLTIMQLMTKEGGMNPEFSKTKFVTDDDLNKSLEYYCERMF 528
           +G+LT  +L  ++GG+       +F  DDD+NKSL Y+    F
Sbjct: 290 SGRLTTERL--RKGGVLQAIRNLQF--DDDINKSLRYFSYEHF 328


>U27312-10|AAA68253.1|  231|Caenorhabditis elegans Hypothetical
           protein F26A1.12 protein.
          Length = 231

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 13/29 (44%), Positives = 14/29 (48%)
 Frame = -3

Query: 736 RPQSRTGPARGP*HTPPPFLWSKSCPLQW 650
           RP     P R P  TPPP   + SCP  W
Sbjct: 49  RPPRPNRPPRPPPATPPPTTPAPSCPGGW 77


>Z92807-4|CAB07263.1| 1004|Caenorhabditis elegans Hypothetical
           protein K11D9.2b protein.
          Length = 1004

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 523 MFEDNEDEITSLYVKRPDDDVMPDAEREIC 612
           +F +NED     Y  R  DD+ P+ + E C
Sbjct: 642 LFGENEDTTGKAYTGREFDDLPPEQQSEAC 671


>Z92807-3|CAB07262.1| 1059|Caenorhabditis elegans Hypothetical
           protein K11D9.2a protein.
          Length = 1059

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 523 MFEDNEDEITSLYVKRPDDDVMPDAEREIC 612
           +F +NED     Y  R  DD+ P+ + E C
Sbjct: 642 LFGENEDTTGKAYTGREFDDLPPEQQSEAC 671


>Z81581-6|CAB04666.1|  679|Caenorhabditis elegans Hypothetical
           protein T02E1.3b protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = +2

Query: 251 ESMSATSEWTKMATQCSRKCPLTDLRSTFPNLLMRFAKRWMTTSAFTTSRPV 406
           ES SA S  TKM    S K P+TD      N  +R   R    S+  +S PV
Sbjct: 511 ESSSAASLLTKMDALRSDKYPITDEEMMMANDFVRQGDRDDKLSSSESSSPV 562


>Z81581-5|CAB04667.2|  646|Caenorhabditis elegans Hypothetical
           protein T02E1.3a protein.
          Length = 646

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/52 (38%), Positives = 24/52 (46%)
 Frame = +2

Query: 251 ESMSATSEWTKMATQCSRKCPLTDLRSTFPNLLMRFAKRWMTTSAFTTSRPV 406
           ES SA S  TKM    S K P+TD      N  +R   R    S+  +S PV
Sbjct: 478 ESSSAASLLTKMDALRSDKYPITDEEMMMANDFVRQGDRDDKLSSSESSSPV 529


>U41990-3|AAY44010.1|  291|Caenorhabditis elegans Hypothetical
           protein F52B10.2 protein.
          Length = 291

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 17/64 (26%), Positives = 30/64 (46%)
 Frame = +1

Query: 361 KKMDDYVRVYYKSTGKLTIMQLMTKEGGMNPEFSKTKFVTDDDLNKSLEYYCERMFEDNE 540
           K+  D + V  K +G   +++ +     +     +  F  D + NK LE+Y E+M E   
Sbjct: 26  KRFPDAIIVGVKKSGTRALLEFLRVNPLIKAPGPEVHFF-DKNFNKGLEWYREQMPETKF 84

Query: 541 DEIT 552
            E+T
Sbjct: 85  GEVT 88


>AL132949-5|CAB61074.1|  144|Caenorhabditis elegans Hypothetical
           protein Y53F4B.5 protein.
          Length = 144

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 225 HLVKLLKRRPTKCPYLRR 172
           H+VK +K+ P  CPY RR
Sbjct: 55  HIVKHVKKYPFNCPYCRR 72


>AJ012296-1|CAA09985.1| 1059|Caenorhabditis elegans calcium ATPase
           protein.
          Length = 1059

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 523 MFEDNEDEITSLYVKRPDDDVMPDAEREIC 612
           +F +NED     Y  R  DD+ P+ + E C
Sbjct: 642 LFGENEDTTGKAYTGREFDDLPPEQQSEAC 671


>AC024818-2|AAF60781.1|  302|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 262 protein.
          Length = 302

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 18/59 (30%), Positives = 27/59 (45%)
 Frame = +1

Query: 382 RVYYKSTGKLTIMQLMTKEGGMNPEFSKTKFVTDDDLNKSLEYYCERMFEDNEDEITSL 558
           RV+    G     +L+ K     P F K K V +   NKS + Y    F D+ED + ++
Sbjct: 204 RVFCGDLGNEVSDELLAKAFRKYPSFQKAKVVRESRTNKS-KGYGFVSFRDSEDYVRAM 261


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,634,160
Number of Sequences: 27780
Number of extensions: 344219
Number of successful extensions: 1136
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1136
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)