Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P11_F_A17
         (744 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   7.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   9.2  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/59 (20%), Positives = 28/59 (47%)
 Frame = +1

Query: 322  SAVYISELIDEICKKMDDYVRVYYKSTGKLTIMQLMTKEGGMNPEFSKTKFVTDDDLNK 498
            S V +S  +++   K +DY+     S+   +     + E   NP+   T+++ +D + +
Sbjct: 930  SLVDVSTPVNKKVYKQNDYIVDESSSSSFYSSFLYKSSESSCNPDQKPTEYLLEDSMKQ 988


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 93  SSKANSLXISNAYNNG*LECV 31
           S + N+  ISN+Y NG +E +
Sbjct: 166 SPENNTCSISNSYTNGCVEAL 186


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +2

Query: 584 SCRTRNARYASTTPSIARS-GCYPLKRTRLGPEKW 685
           +CRT+N  Y    P I  + G  PL +    P+ +
Sbjct: 24  TCRTKNGDYTKIMPDILTAIGQTPLIKLNNIPKSY 58


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 493 NKSLEYYCERMFEDNEDEITSLYV 564
           N S  Y  +R F+D  ++  +LYV
Sbjct: 14  NFSCYYSLKRHFQDKHEQSDTLYV 37


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,659
Number of Sequences: 438
Number of extensions: 4327
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23266665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)